Temporal Variability of <italic toggle="yes">Escherichia coli</italic> Diversity in the Gastrointestinal Tracts of Tanzanian Children with and without Exposure to Antibiotics

par Taylor K. S. Richter, Tracy H. Hazen, Diana Lam, Christian L. Coles, Jessica C. Seidman, Yaqi You, Ellen K. Silbergeld, Claire M. Fraser, David A. Rasko
Publié 2018

Examination of the Enterotoxigenic <named-content content-type="genus-species">Escherichia coli</named-content> Population Structure during Human Infection

par Jason W. Sahl, Jeticia R. Sistrunk, Claire M. Fraser, Erin Hine, Nabilah Baby, Yasmin Begum, Qingwei Luo, Alaullah Sheikh, Firdausi Qadri, James M. Fleckenstein, David A. Rasko
Publié 2015

Gut microbiome and metabolome in a non-human primate model of chronic excessive alcohol drinking

par Daria Piacentino, Silvia Grant-Beurmann, Carlotta Vizioli, Xiaobai Li, Catherine F. Moore, Victor Ruiz-Rodado, Mary R. Lee, Paule V. Joseph, Claire M. Fraser, Elise M. Weerts, Lorenzo Leggio
Publié 2021

Compositional and Functional Differences in the Human Gut Microbiome Correlate with Clinical Outcome following Infection with Wild-Type <named-content content-type="genus-species">...

par Yan Zhang, Arthur Brady, Cheron Jones, Yang Song, Thomas C. Darton, Claire Jones, Christoph J. Blohmke, Andrew J. Pollard, Laurence S. Magder, Alessio Fasano, Marcelo B. Sztein, Claire M. Fraser
Publié 2018

FADU: a Quantification Tool for Prokaryotic Transcriptomic Analyses

par Matthew Chung, Ricky S. Adkins, John S. A. Mattick, Katie R. Bradwell, Amol C. Shetty, Lisa Sadzewicz, Luke J. Tallon, Claire M. Fraser, David A. Rasko, Anup Mahurkar, Julie C. Dunning Hotopp
Publié 2021

Functional Dynamics of the Gut Microbiome in Elderly People during Probiotic Consumption

par Emiley A. Eloe-Fadrosh, Arthur Brady, Jonathan Crabtree, Elliott F. Drabek, Bing Ma, Anup Mahurkar, Jacques Ravel, Miriam Haverkamp, Anne-Maria Fiorino, Christine Botelho, Irina Andreyeva, Patricia L. Hibberd, Claire M. Fraser
Publié 2015

Phylogenomic Identification of Regulatory Sequences in Bacteria: an Analysis of Statistical Power and an Application to <named-content content-type="genus-species">Borrelia burgdor...

par Che I. Martin, Tika Y. Sukarna, Saymon Akther, Girish Ramrattan, Pedro Pagan, Lia Di, Emmanuel F. Mongodin, Claire M. Fraser, Steven E. Schutzer, Benjamin J. Luft, Sherwood R. Casjens, Wei-Gang Qiu
Publié 2015

Erratum for Martin et al., Phylogenomic Identification of Regulatory Sequences in Bacteria: an Analysis of Statistical Power and an Application to <named-content content-type="genu...

par Che L. Martin, Tika Y. Sukarna, Saymon Akther, Girish Ramrattan, Pedro Pagan, Lia Di, Emmanuel F. Mongodin, Claire M. Fraser, Steven E. Schutzer, Benjamin J. Luft, Sherwood R. Casjens, Wei-Gang Qiu
Publié 2015

Strategies for metagenomic-guided whole-community proteomics of complex microbial environments.

par Brandi L Cantarel, Alison R Erickson, Nathan C VerBerkmoes, Brian K Erickson, Patricia A Carey, Chongle Pan, Manesh Shah, Emmanuel F Mongodin, Janet K Jansson, Claire M Fraser-Liggett, Robert L Hettich
Publié 2011

Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease.

par Alison R Erickson, Brandi L Cantarel, Regina Lamendella, Youssef Darzi, Emmanuel F Mongodin, Chongle Pan, Manesh Shah, Jonas Halfvarson, Curt Tysk, Bernard Henrissat, Jeroen Raes, Nathan C Verberkmoes, Claire M Fraser, Robert L Hettich, Janet K Jansson
Publié 2012

Genomic Epidemiology of the Haitian Cholera Outbreak: a Single Introduction Followed by Rapid, Extensive, and Continued Spread Characterized the Onset of the Epidemic

par Mark Eppinger, Talima Pearson, Sara S. K. Koenig, Ofori Pearson, Nathan Hicks, Sonia Agrawal, Fatemeh Sanjar, Kevin Galens, Sean Daugherty, Jonathan Crabtree, Rene S. Hendriksen, Lance B. Price, Bishnu P. Upadhyay, Geeta Shakya, Claire M. Fraser, Jacques Ravel, Paul S. Keim
Publié 2014

Analysis of the gut microbiota in the old order Amish and its relation to the metabolic syndrome.

par Margaret L Zupancic, Brandi L Cantarel, Zhenqiu Liu, Elliott F Drabek, Kathleen A Ryan, Shana Cirimotich, Cheron Jones, Rob Knight, William A Walters, Daniel Knights, Emmanuel F Mongodin, Richard B Horenstein, Braxton D Mitchell, Nanette Steinle, Soren Snitker, Alan R Shuldiner, Claire M Fraser
Publié 2012

An integrated genomic and transcriptomic survey of mucormycosis-causing fungi

par Marcus C. Chibucos, Sameh Soliman, Teclegiorgis Gebremariam, Hongkyu Lee, Sean Daugherty, Joshua Orvis, Amol C. Shetty, Jonathan Crabtree, Tracy H. Hazen, Kizee A. Etienne, Priti Kumari, Timothy D. O’Connor, David A. Rasko, Scott G. Filler, Claire M. Fraser, Shawn R. Lockhart, Christopher D. Skory, Ashraf S. Ibrahim, Vincent M. Bruno
Publié 2016

Genomic insights into the Ixodes scapularis tick vector of Lyme disease

par Monika Gulia-Nuss, Andrew B. Nuss, Jason M. Meyer, Daniel E. Sonenshine, R. Michael Roe, Robert M. Waterhouse, David B. Sattelle, José de la Fuente, Jose M. Ribeiro, Karine Megy, Jyothi Thimmapuram, Jason R. Miller, Brian P. Walenz, Sergey Koren, Jessica B. Hostetler, Mathangi Thiagarajan, Vinita S. Joardar, Linda I. Hannick, Shelby Bidwell, Martin P. Hammond, Sarah Young, Qiandong Zeng, Jenica L. Abrudan, Francisca C. Almeida, Nieves Ayllón, Ketaki Bhide, Brooke W. Bissinger, Elena Bonzon-Kulichenko, Steven D. Buckingham, Daniel R. Caffrey, Melissa J. Caimano, Vincent Croset, Timothy Driscoll, Don Gilbert, Joseph J. Gillespie, Gloria I. Giraldo-Calderón, Jeffrey M. Grabowski, David Jiang, Sayed M. S. Khalil, Donghun Kim, Katherine M. Kocan, Juraj Koči, Richard J. Kuhn, Timothy J. Kurtti, Kristin Lees, Emma G. Lang, Ryan C. Kennedy, Hyeogsun Kwon, Rushika Perera, Yumin Qi, Justin D. Radolf, Joyce M. Sakamoto, Alejandro Sánchez-Gracia, Maiara S. Severo, Neal Silverman, Ladislav Šimo, Marta Tojo, Cristian Tornador, Janice P. Van Zee, Jesús Vázquez, Filipe G. Vieira, Margarita Villar, Adam R. Wespiser, Yunlong Yang, Jiwei Zhu, Peter Arensburger, Patricia V. Pietrantonio, Stephen C. Barker, Renfu Shao, Evgeny M. Zdobnov, Frank Hauser, Cornelis J. P. Grimmelikhuijzen, Yoonseong Park, Julio Rozas, Richard Benton, Joao H. F. Pedra, David R. Nelson, Maria F. Unger, Jose M. C. Tubio, Zhijian Tu, Hugh M. Robertson, Martin Shumway, Granger Sutton, Jennifer R. Wortman, Daniel Lawson, Stephen K. Wikel, Vishvanath M. Nene, Claire M. Fraser, Frank H. Collins, Bruce Birren, Karen E. Nelson, Elisabet Caler, Catherine A. Hill
Publié 2016