PLoS Biology 2.0.

by Jonathan A Eisen
Published 2008

Accounting for alignment uncertainty in phylogenomics.

by Martin Wu, Sourav Chatterji, Jonathan A Eisen
Published 2012

BioTorrents: a file sharing service for scientific data.

by Morgan G I Langille, Jonathan A Eisen
Published 2010

Genomics of emerging infectious disease: A PLoS collection.

by Jonathan A Eisen, Catriona J MacCallum
Published 2009

Systematic identification of gene families for use as "markers" for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups.

by Dongying Wu, Guillaume Jospin, Jonathan A Eisen
Published 2013

Metagenomic sequencing of an in vitro-simulated microbial community.

by Jenna L Morgan, Aaron E Darling, Jonathan A Eisen
Published 2010

Phylogeny of bacterial and archaeal genomes using conserved genes: supertrees and supermatrices.

by Jenna Morgan Lang, Aaron E Darling, Jonathan A Eisen
Published 2013

An automated phylogenetic tree-based small subunit rRNA taxonomy and alignment pipeline (STAP).

by Dongying Wu, Amber Hartman, Naomi Ward, Jonathan A Eisen
Published 2008

microBEnet: lessons learned from building an interdisciplinary scientific community in the online sphere.

by Holly M Bik, David A Coil, Jonathan A Eisen
Published 2014

An integrated pipeline for de novo assembly of microbial genomes.

by Andrew Tritt, Jonathan A Eisen, Marc T Facciotti, Aaron E Darling
Published 2012

Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance.

by Steven W Kembel, Martin Wu, Jonathan A Eisen, Jessica L Green
Published 2012

The Cloacal Microbiome of Five Wild Duck Species Varies by Species and Influenza A Virus Infection Status

by Sarah M. Hird, Holly Ganz, Jonathan A. Eisen, Walter M. Boyce
Published 2018

Recent Outbreaks of Shigellosis in California Caused by Two Distinct Populations of <named-content content-type="genus-species">Shigella sonnei</named-content> with either Increase...

by Varvara K. Kozyreva, Guillaume Jospin, Alexander L. Greninger, James P. Watt, Jonathan A. Eisen, Vishnu Chaturvedi
Published 2016

Reply to McDonald, “Protections against the Risk of Airborne SARS-CoV-2 Infection”

by Leslie Dietz, Patrick F. Horve, David A. Coil, Mark Fretz, Jonathan A. Eisen, Kevin Van Den Wymelenberg
Published 2020

2019 Novel Coronavirus (COVID-19) Pandemic: Built Environment Considerations To Reduce Transmission

by Leslie Dietz, Patrick F. Horve, David A. Coil, Mark Fretz, Jonathan A. Eisen, Kevin Van Den Wymelenberg
Published 2020

Correction for Dietz et al., “2019 Novel Coronavirus (COVID-19) Pandemic: Built Environment Considerations To Reduce Transmission”

by Leslie Dietz, Patrick F. Horve, David A. Coil, Mark Fretz, Jonathan A. Eisen, Kevin Van Den Wymelenberg
Published 2020

Community-Level Differences in the Microbiome of Healthy Wild Mallards and Those Infected by Influenza A Viruses

by Holly H. Ganz, Ladan Doroud, Alana J. Firl, Sarah M. Hird, Jonathan A. Eisen, Walter M. Boyce
Published 2017

Stalking the fourth domain in metagenomic data: searching for, discovering, and interpreting novel, deep branches in marker gene phylogenetic trees.

by Dongying Wu, Martin Wu, Aaron Halpern, Douglas B Rusch, Shibu Yooseph, Marvin Frazier, J Craig Venter, Jonathan A Eisen
Published 2011

Functional biogeography of ocean microbes revealed through non-negative matrix factorization.

by Xingpeng Jiang, Morgan G I Langille, Russell Y Neches, Marie Elliot, Simon A Levin, Jonathan A Eisen, Joshua S Weitz, Jonathan Dushoff
Published 2012

PhylOTU: a high-throughput procedure quantifies microbial community diversity and resolves novel taxa from metagenomic data.

by Thomas J Sharpton, Samantha J Riesenfeld, Steven W Kembel, Joshua Ladau, James P O'Dwyer, Jessica L Green, Jonathan A Eisen, Katherine S Pollard
Published 2011