SMARTdenovo: a de novo assembler using long noisy reads

by Hailin Liu, Shigang Wu, Alun Li, Jue Ruan
Published 2021

Ultrasensitive and high-efficiency screen of de novo low-frequency mutations by o2n-seq

by Kaile Wang, Shujuan Lai, Xiaoxu Yang, Tianqi Zhu, Xuemei Lu, Chung-I Wu, Jue Ruan
Published 2017

Reference-free comparative genomics of 174 chloroplasts.

by Chai-Shian Kua, Jue Ruan, John Harting, Cheng-Xi Ye, Matthew R Helmus, Jun Yu, Charles H Cannon
Published 2012

High-quality reference genome of Fasciola gigantica: Insights into the genomic signatures of transposon-mediated evolution and specific parasitic adaption in tropical regions.

by Xier Luo, Kuiqing Cui, Zhiqiang Wang, Zhipeng Li, Zhengjiao Wu, Weiyi Huang, Xing-Quan Zhu, Jue Ruan, Weiyu Zhang, Qingyou Liu
Published 2021

Sequencing of Chinese castor lines reveals genetic signatures of selection and yield-associated loci

by Wei Fan, Jianjun Lu, Cheng Pan, Meilian Tan, Qiang Lin, Wanfei Liu, Donghai Li, Lijun Wang, Lianlian Hu, Lei Wang, Chen Chen, Aimin Wu, Xinxin Yu, Jue Ruan, Jun Yu, Songnian Hu, Xingchu Yan, Shiyou Lü, Peng Cui
Published 2019

Genome and single-cell RNA-sequencing of the earthworm Eisenia andrei identifies cellular mechanisms underlying regeneration

by Yong Shao, Xiao-Bo Wang, Jin-Jin Zhang, Ming-Li Li, Shou-Song Wu, Xi-Yao Ma, Xue Wang, Hui-Fang Zhao, Yuan Li, Helen He Zhu, David M. Irwin, De-Peng Wang, Guo-Jie Zhang, Jue Ruan, Dong-Dong Wu
Published 2020

Population sequencing enhances understanding of tea plant evolution

by Xinchao Wang, Hu Feng, Yuxiao Chang, Chunlei Ma, Liyuan Wang, Xinyuan Hao, A’lun Li, Hao Cheng, Lu Wang, Peng Cui, Jiqiang Jin, Xiaobo Wang, Kang Wei, Cheng Ai, Sheng Zhao, Zhichao Wu, Youyong Li, Benying Liu, Guo-Dong Wang, Liang Chen, Jue Ruan, Yajun Yang
Published 2020

Penaeid shrimp genome provides insights into benthic adaptation and frequent molting

by Xiaojun Zhang, Jianbo Yuan, Yamin Sun, Shihao Li, Yi Gao, Yang Yu, Chengzhang Liu, Quanchao Wang, Xinjia Lv, Xiaoxi Zhang, Ka Yan Ma, Xiaobo Wang, Wenchao Lin, Long Wang, Xueli Zhu, Chengsong Zhang, Jiquan Zhang, Songjun Jin, Kuijie Yu, Jie Kong, Peng Xu, Jack Chen, Hongbin Zhang, Patrick Sorgeloos, Amir Sagi, Acacia Alcivar-Warren, Zhanjiang Liu, Lei Wang, Jue Ruan, Ka Hou Chu, Bin Liu, Fuhua Li, Jianhai Xiang
Published 2019