Real-time relative qPCR without reference to control samples and estimation of run-specific PCR parameters from run-internal mini-standard curves.

by Jens Magnus Bernth Jensen, Mikkel Steen Petersen, Marc Stegger, Lars J Østergaard, Bjarne K Møller
Published 2010

Evaluating coverage bias in next-generation sequencing of Escherichia coli.

by Samantha Gunasekera, Sam Abraham, Marc Stegger, Stanley Pang, Penghao Wang, Shafi Sahibzada, Mark O'Dea
Published 2021

A universal primer-independent next-generation sequencing approach for investigations of norovirus outbreaks and novel variants

by Jannik Fonager, Marc Stegger, Lasse Dam Rasmussen, Mille Weismann Poulsen, Jesper Rønn, Paal Skytt Andersen, Thea Kølsen Fischer
Published 2017

Genome analysis of Staphylococcus aureus ST291, a double locus variant of ST398, reveals a distinct genetic lineage.

by Marc Stegger, Maliha Aziz, Tomasz Chroboczek, Lance B Price, Troels Ronco, Kristoffer Kiil, Robert L Skov, Frederic Laurent, Paal S Andersen
Published 2013

Drivers and Dynamics of Methicillin-Resistant Livestock-Associated <named-content content-type="genus-species">Staphylococcus aureus</named-content> CC398 in Pigs and Humans in Den...

by Raphael N. Sieber, Robert L. Skov, Jens Nielsen, Jana Schulz, Lance B. Price, Frank M. Aarestrup, Anders R. Larsen, Marc Stegger, Jesper Larsen
Published 2018

Mapping the Evolution of Hypervirulent <named-content content-type="genus-species">Klebsiella pneumoniae</named-content>

by Carsten Struve, Chandler C. Roe, Marc Stegger, Steen G. Stahlhut, Dennis S. Hansen, David M. Engelthaler, Paal S. Andersen, Elizabeth M. Driebe, Paul Keim, Karen A. Krogfelt
Published 2015

SCC<italic toggle="yes">mec</italic>Finder, a Web-Based Tool for Typing of Staphylococcal Cassette Chromosome <italic toggle="yes">mec</italic> in <named-content content-type="genu...

by Hülya Kaya, Henrik Hasman, Jesper Larsen, Marc Stegger, Thor Bech Johannesen, Rosa Lundbye Allesøe, Camilla Koldbæk Lemvigh, Frank Møller Aarestrup, Ole Lund, Anders Rhod Larsen
Published 2018

Diversity and Population Overlap between Avian and Human <named-content content-type="genus-species">Escherichia coli</named-content> Belonging to Sequence Type 95

by Steffen L. Jørgensen, Marc Stegger, Eglé Kudirkiene, Berit Lilje, Louise L. Poulsen, Troels Ronco, Teresa Pires Dos Santos, Kristoffer Kiil, Magne Bisgaard, Karl Pedersen, Lisa K. Nolan, Lance B. Price, Rikke H. Olsen, Paal S. Andersen, Henrik Christensen
Published 2019

<named-content content-type="genus-species">Escherichia coli</named-content> ST131-<italic toggle="yes">H</italic>22 as a Foodborne Uropathogen

by Cindy M. Liu, Marc Stegger, Maliha Aziz, Timothy J. Johnson, Kara Waits, Lora Nordstrom, Lori Gauld, Brett Weaver, Diana Rolland, Sally Statham, Joseph Horwinski, Sanjeev Sariya, Gregg S. Davis, Evgeni Sokurenko, Paul Keim, James R. Johnson, Lance B. Price
Published 2018

The Epidemic of Extended-Spectrum-β-Lactamase-Producing <named-content content-type="genus-species">Escherichia coli</named-content> ST131 Is Driven by a Single Highly Pathogenic S...

by Lance B. Price, James R. Johnson, Maliha Aziz, Connie Clabots, Brian Johnston, Veronika Tchesnokova, Lora Nordstrom, Maria Billig, Sujay Chattopadhyay, Marc Stegger, Paal S. Andersen, Talima Pearson, Kim Riddell, Peggy Rogers, Delia Scholes, Barbara Kahl, Paul Keim, Evgeni V. Sokurenko
Published 2013

Evolution and Population Dynamics of Clonal Complex 152 Community-Associated Methicillin-Resistant <italic toggle="yes">Staphylococcus aureus</italic>

by Sharmin Baig, Anders Rhod Larsen, Patrícia Martins Simões, Frédéric Laurent, Thor Bech Johannesen, Berit Lilje, Anne Tristan, Frieder Schaumburg, Beverly Egyir, Ivana Cirkovic, Graeme R. Nimmo, Iris Spiliopoulou, Dominique S. Blanc, Sara Mernelius, Aina Elisabeth Fossum Moen, Michael Z. David, Paal Skytt Andersen, Marc Stegger
Published 2020

Emergence of Enteroaggregative <named-content content-type="genus-species">Escherichia coli</named-content> within the ST131 Lineage as a Cause of Extraintestinal Infections

by Erik J. Boll, Søren Overballe-Petersen, Henrik Hasman, Louise Roer, Kim Ng, Flemming Scheutz, Anette M. Hammerum, Arnold Dungu, Frank Hansen, Thor B. Johannesen, Abigail Johnson, Divek T. Nair, Berit Lilje, Dennis S. Hansen, Karen A. Krogfelt, Timothy J. Johnson, Lance B. Price, James R. Johnson, Carsten Struve, Bente Olesen, Marc Stegger
Published 2020

<italic toggle="yes">Escherichia coli</italic> Sequence Type 410 Is Causing New International High-Risk Clones

by Louise Roer, Søren Overballe-Petersen, Frank Hansen, Kristian Schønning, Mikala Wang, Bent L. Røder, Dennis S. Hansen, Ulrik S. Justesen, Leif P. Andersen, David Fulgsang-Damgaard, Katie L. Hopkins, Neil Woodford, Linda Falgenhauer, Trinad Chakraborty, Ørjan Samuelsen, Karin Sjöström, Thor B. Johannesen, Kim Ng, Jens Nielsen, Steen Ethelberg, Marc Stegger, Anette M. Hammerum, Henrik Hasman
Published 2018

Origin and Evolution of European Community-Acquired Methicillin-Resistant <named-content content-type="genus-species">Staphylococcus aureus</named-content>

by Marc Stegger, Thierry Wirth, Paal S. Andersen, Robert L. Skov, Anna De Grassi, Patricia Martins Simões, Anne Tristan, Andreas Petersen, Maliha Aziz, Kristoffer Kiil, Ivana Cirković, Edet E. Udo, Rosa del Campo, Jaana Vuopio-Varkila, Norazah Ahmad, Sima Tokajian, Georg Peters, Frieder Schaumburg, Barbro Olsson-Liljequist, Michael Givskov, Elizabeth E. Driebe, Henrik E. Vigh, Adebayo Shittu, Nadjia Ramdani-Bougessa, Jean-Philippe Rasigade, Lance B. Price, Francois Vandenesch, Anders R. Larsen, Frederic Laurent
Published 2014

<named-content content-type="genus-species">Staphylococcus aureus</named-content> CC398: Host Adaptation and Emergence of Methicillin Resistance in Livestock

by Lance B. Price, Marc Stegger, Henrik Hasman, Maliha Aziz, Jesper Larsen, Paal Skytt Andersen, Talima Pearson, Andrew E. Waters, Jeffrey T. Foster, James Schupp, John Gillece, Elizabeth Driebe, Cindy M. Liu, Burkhard Springer, Irena Zdovc, Antonio Battisti, Alessia Franco, Jacek Żmudzki, Stefan Schwarz, Patrick Butaye, Eric Jouy, Constanca Pomba, M. Concepción Porrero, Raymond Ruimy, Tara C. Smith, D. Ashley Robinson, J. Scott Weese, Carmen Sofia Arriola, Fangyou Yu, Frederic Laurent, Paul Keim, Robert Skov, Frank M. Aarestrup
Published 2013

<named-content content-type="genus-species">Staphylococcus aureus</named-content> CC398: Host Adaptation and Emergence of Methicillin Resistance in Livestock

by Lance B. Price, Marc Stegger, Henrik Hasman, Maliha Aziz, Jesper Larsen, Paal Skytt Andersen, Talima Pearson, Andrew E. Waters, Jeffrey T. Foster, James Schupp, John Gillece, Elizabeth Driebe, Cindy M. Liu, Burkhard Springer, Irena Zdovc, Antonio Battisti, Alessia Franco, Jacek Żmudzki, Stefan Schwarz, Patrick Butaye, Eric Jouy, Constanca Pomba, M. Concepción Porrero, Raymond Ruimy, Tara C. Smith, D. Ashley Robinson, J. Scott Weese, Carmen Sofia Arriola, Fangyou Yu, Frederic Laurent, Paul Keim, Robert Skov, Frank M. Aarestrup
Published 2012