Genomic regions associated with physiological, biochemical and yield-related responses under water deficit in diploid potato at the tuber initiation stage revealed by GWAS

Water deficit, which is increasing with climate change, is a serious threat to agricultural sustainability worldwide. Dissection of the genetic architecture of water deficit responses is highly desirable for developing water-deficit tolerant potato cultivars and enhancing the resilience of existing...

Descripción completa

Guardado en:
Detalles Bibliográficos
Autores principales: Paula Díaz, Felipe Sarmiento, Boby Mathew, Agim Ballvora, Teresa Mosquera Vásquez
Formato: article
Lenguaje:EN
Publicado: Public Library of Science (PLoS) 2021
Materias:
R
Q
Acceso en línea:https://doaj.org/article/02a511e7b8f94e0c9d6bc45ed5092410
Etiquetas: Agregar Etiqueta
Sin Etiquetas, Sea el primero en etiquetar este registro!
id oai:doaj.org-article:02a511e7b8f94e0c9d6bc45ed5092410
record_format dspace
spelling oai:doaj.org-article:02a511e7b8f94e0c9d6bc45ed50924102021-11-18T06:34:26ZGenomic regions associated with physiological, biochemical and yield-related responses under water deficit in diploid potato at the tuber initiation stage revealed by GWAS1932-6203https://doaj.org/article/02a511e7b8f94e0c9d6bc45ed50924102021-01-01T00:00:00Zhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8575265/?tool=EBIhttps://doaj.org/toc/1932-6203Water deficit, which is increasing with climate change, is a serious threat to agricultural sustainability worldwide. Dissection of the genetic architecture of water deficit responses is highly desirable for developing water-deficit tolerant potato cultivars and enhancing the resilience of existing cultivars. This study examined genetic variation in response to water deficit in a panel of diploid potato and identified the QTL governing this trait via a genome-wide association study (GWAS). A panel of 104 diploid potato accessions were evaluated under both well-watered and water deficit treatments at tuber initiation stage. Drought stress index (DTI) was calculated to assess tolerance of the diploid potato genotypes to water deficit. The GWAS was conducted using a matrix of 47K single nucleotide polymorphisms (SNP), recently available for this population. We are reporting 38 QTL, seven for well-watered conditions, twenty-two for water deficit conditions and nine for DTI which explain between 12.6% and 44.1% of the phenotypic variance. A set of 6 QTL were found to be associated with more than one variable. Marker WDP-9.21 was found associated with tuber fresh weigh under WD and gene annotation analysis revealed co-localization with the Glucan/water dikinase (GWD) gene. Of the nine QTL detected from DTI on chromosomes 2,3,5,8,10 and 12, three candidate genes with a feasible role in water deficit response were identified. The findings of this study can be used in marker-assisted selection (MAS) for water- deficit tolerance breeding in potato.Paula DíazFelipe SarmientoBoby MathewAgim BallvoraTeresa Mosquera VásquezPublic Library of Science (PLoS)articleMedicineRScienceQENPLoS ONE, Vol 16, Iss 11 (2021)
institution DOAJ
collection DOAJ
language EN
topic Medicine
R
Science
Q
spellingShingle Medicine
R
Science
Q
Paula Díaz
Felipe Sarmiento
Boby Mathew
Agim Ballvora
Teresa Mosquera Vásquez
Genomic regions associated with physiological, biochemical and yield-related responses under water deficit in diploid potato at the tuber initiation stage revealed by GWAS
description Water deficit, which is increasing with climate change, is a serious threat to agricultural sustainability worldwide. Dissection of the genetic architecture of water deficit responses is highly desirable for developing water-deficit tolerant potato cultivars and enhancing the resilience of existing cultivars. This study examined genetic variation in response to water deficit in a panel of diploid potato and identified the QTL governing this trait via a genome-wide association study (GWAS). A panel of 104 diploid potato accessions were evaluated under both well-watered and water deficit treatments at tuber initiation stage. Drought stress index (DTI) was calculated to assess tolerance of the diploid potato genotypes to water deficit. The GWAS was conducted using a matrix of 47K single nucleotide polymorphisms (SNP), recently available for this population. We are reporting 38 QTL, seven for well-watered conditions, twenty-two for water deficit conditions and nine for DTI which explain between 12.6% and 44.1% of the phenotypic variance. A set of 6 QTL were found to be associated with more than one variable. Marker WDP-9.21 was found associated with tuber fresh weigh under WD and gene annotation analysis revealed co-localization with the Glucan/water dikinase (GWD) gene. Of the nine QTL detected from DTI on chromosomes 2,3,5,8,10 and 12, three candidate genes with a feasible role in water deficit response were identified. The findings of this study can be used in marker-assisted selection (MAS) for water- deficit tolerance breeding in potato.
format article
author Paula Díaz
Felipe Sarmiento
Boby Mathew
Agim Ballvora
Teresa Mosquera Vásquez
author_facet Paula Díaz
Felipe Sarmiento
Boby Mathew
Agim Ballvora
Teresa Mosquera Vásquez
author_sort Paula Díaz
title Genomic regions associated with physiological, biochemical and yield-related responses under water deficit in diploid potato at the tuber initiation stage revealed by GWAS
title_short Genomic regions associated with physiological, biochemical and yield-related responses under water deficit in diploid potato at the tuber initiation stage revealed by GWAS
title_full Genomic regions associated with physiological, biochemical and yield-related responses under water deficit in diploid potato at the tuber initiation stage revealed by GWAS
title_fullStr Genomic regions associated with physiological, biochemical and yield-related responses under water deficit in diploid potato at the tuber initiation stage revealed by GWAS
title_full_unstemmed Genomic regions associated with physiological, biochemical and yield-related responses under water deficit in diploid potato at the tuber initiation stage revealed by GWAS
title_sort genomic regions associated with physiological, biochemical and yield-related responses under water deficit in diploid potato at the tuber initiation stage revealed by gwas
publisher Public Library of Science (PLoS)
publishDate 2021
url https://doaj.org/article/02a511e7b8f94e0c9d6bc45ed5092410
work_keys_str_mv AT pauladiaz genomicregionsassociatedwithphysiologicalbiochemicalandyieldrelatedresponsesunderwaterdeficitindiploidpotatoatthetuberinitiationstagerevealedbygwas
AT felipesarmiento genomicregionsassociatedwithphysiologicalbiochemicalandyieldrelatedresponsesunderwaterdeficitindiploidpotatoatthetuberinitiationstagerevealedbygwas
AT bobymathew genomicregionsassociatedwithphysiologicalbiochemicalandyieldrelatedresponsesunderwaterdeficitindiploidpotatoatthetuberinitiationstagerevealedbygwas
AT agimballvora genomicregionsassociatedwithphysiologicalbiochemicalandyieldrelatedresponsesunderwaterdeficitindiploidpotatoatthetuberinitiationstagerevealedbygwas
AT teresamosqueravasquez genomicregionsassociatedwithphysiologicalbiochemicalandyieldrelatedresponsesunderwaterdeficitindiploidpotatoatthetuberinitiationstagerevealedbygwas
_version_ 1718424456429305856