Retrotranspositional landscape of Asian rice revealed by 3000 genomes

Transposable elements (TE) are the dominant constituent of plant genomes. Here the authors develop a tool to analyze TE insertion sites in 3000 rice genomes and provide evidence for recent TE activity during cultivation and that external, rather than genetic, stimuli trigger most activations.

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Auteurs principaux: Marie-Christine Carpentier, Ernandes Manfroi, Fu-Jin Wei, Hshin-Ping Wu, Eric Lasserre, Christel Llauro, Emilie Debladis, Roland Akakpo, Yue-Ie Hsing, Olivier Panaud
Format: article
Langue:EN
Publié: Nature Portfolio 2019
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Accès en ligne:https://doaj.org/article/03cb41f1affb43c6869b6491acddb74e
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Résumé:Transposable elements (TE) are the dominant constituent of plant genomes. Here the authors develop a tool to analyze TE insertion sites in 3000 rice genomes and provide evidence for recent TE activity during cultivation and that external, rather than genetic, stimuli trigger most activations.