Retrotranspositional landscape of Asian rice revealed by 3000 genomes

Retrotranspositional landscape of Asian rice revealed by 3000 genomes

Transposable elements (TE) are the dominant constituent of plant genomes. Here the authors develop a tool to analyze TE insertion sites in 3000 rice genomes and provide evidence for recent TE activity during cultivation and that external, rather than genetic, stimuli trigger most activations.

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Autores principales: Marie-Christine Carpentier, Ernandes Manfroi, Fu-Jin Wei, Hshin-Ping Wu, Eric Lasserre, Christel Llauro, Emilie Debladis, Roland Akakpo, Yue-Ie Hsing, Olivier Panaud
Formato: article
Lenguaje:EN
Publicado: Nature Portfolio 2019
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Acceso en línea:https://doaj.org/article/03cb41f1affb43c6869b6491acddb74e
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spelling oai:doaj.org-article:03cb41f1affb43c6869b6491acddb74e2021-12-02T17:01:39ZRetrotranspositional landscape of Asian rice revealed by 3000 genomes10.1038/s41467-018-07974-52041-1723https://doaj.org/article/03cb41f1affb43c6869b6491acddb74e2019-01-01T00:00:00Zhttps://doi.org/10.1038/s41467-018-07974-5https://doaj.org/toc/2041-1723Transposable elements (TE) are the dominant constituent of plant genomes. Here the authors develop a tool to analyze TE insertion sites in 3000 rice genomes and provide evidence for recent TE activity during cultivation and that external, rather than genetic, stimuli trigger most activations.Marie-Christine CarpentierErnandes ManfroiFu-Jin WeiHshin-Ping WuEric LasserreChristel LlauroEmilie DebladisRoland AkakpoYue-Ie HsingOlivier PanaudNature PortfolioarticleScienceQENNature Communications, Vol 10, Iss 1, Pp 1-12 (2019)
institution DOAJ
collection DOAJ
language EN
topic Science
Q
spellingShingle Science
Q
Marie-Christine Carpentier
Ernandes Manfroi
Fu-Jin Wei
Hshin-Ping Wu
Eric Lasserre
Christel Llauro
Emilie Debladis
Roland Akakpo
Yue-Ie Hsing
Olivier Panaud
Retrotranspositional landscape of Asian rice revealed by 3000 genomes
description Transposable elements (TE) are the dominant constituent of plant genomes. Here the authors develop a tool to analyze TE insertion sites in 3000 rice genomes and provide evidence for recent TE activity during cultivation and that external, rather than genetic, stimuli trigger most activations.
format article
author Marie-Christine Carpentier
Ernandes Manfroi
Fu-Jin Wei
Hshin-Ping Wu
Eric Lasserre
Christel Llauro
Emilie Debladis
Roland Akakpo
Yue-Ie Hsing
Olivier Panaud
author_facet Marie-Christine Carpentier
Ernandes Manfroi
Fu-Jin Wei
Hshin-Ping Wu
Eric Lasserre
Christel Llauro
Emilie Debladis
Roland Akakpo
Yue-Ie Hsing
Olivier Panaud
author_sort Marie-Christine Carpentier
title Retrotranspositional landscape of Asian rice revealed by 3000 genomes
title_short Retrotranspositional landscape of Asian rice revealed by 3000 genomes
title_full Retrotranspositional landscape of Asian rice revealed by 3000 genomes
title_fullStr Retrotranspositional landscape of Asian rice revealed by 3000 genomes
title_full_unstemmed Retrotranspositional landscape of Asian rice revealed by 3000 genomes
title_sort retrotranspositional landscape of asian rice revealed by 3000 genomes
publisher Nature Portfolio
publishDate 2019
url https://doaj.org/article/03cb41f1affb43c6869b6491acddb74e
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