Genome-Wide Identification, Characterization and Expression Analysis of Soybean CHYR Gene Family

The CHYR (CHY ZINC-FINGER AND RING FINGER PROTEIN) proteins have been functionally characterized in iron regulation and stress response in Arabidopsis, rice and Populus. However, their roles in soybean have not yet been systematically investig...

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Autores principales:	Bowei Jia, Yan Wang, Dajian Zhang, Wanhong Li, Hongli Cui, Jun Jin, Xiaoxi Cai, Yang Shen, Shengyang Wu, Yongxia Guo, Mingzhe Sun, Xiaoli Sun
Formato:	article
Lenguaje:	EN
Publicado:	MDPI AG 2021
Materias:	CHYR soybean genome-wide identification expression analysis abiotic stress Biology (General) QH301-705.5 Chemistry QD1-999
Acceso en línea:	https://doaj.org/article/0453050722f64e66918b85e8f8e4070f
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spelling	oai:doaj.org-article:0453050722f64e66918b85e8f8e4070f2021-11-25T17:54:13ZGenome-Wide Identification, Characterization and Expression Analysis of Soybean <em>CHYR</em> Gene Family10.3390/ijms2222121921422-00671661-6596https://doaj.org/article/0453050722f64e66918b85e8f8e4070f2021-11-01T00:00:00Zhttps://www.mdpi.com/1422-0067/22/22/12192https://doaj.org/toc/1661-6596https://doaj.org/toc/1422-0067The <i>CHYR</i> (CHY ZINC-FINGER AND RING FINGER PROTEIN) proteins have been functionally characterized in iron regulation and stress response in <i>Arabidopsis</i>, rice and <i>Populus</i>. However, their roles in soybean have not yet been systematically investigated. Here, in this study, 16 <i>GmCHYR</i> genes with conserved Zinc_ribbon, CHY zinc finger and Ring finger domains were obtained and divided into three groups. Moreover, additional 2–3 hemerythrin domains could be found in the N terminus of Group III. Phylogenetic and homology analysis of <i>CHYRs</i> in green plants indicated that three groups might originate from different ancestors. Expectedly, <i>GmCHYR</i> genes shared similar conserved domains/motifs distribution within the same group. Gene expression analysis uncovered their special expression patterns in different soybean tissues/organs and under various abiotic stresses. Group I and II members were mainly involved in salt and alkaline stresses. The expression of Group III members was induced/repressed by dehydration, salt and alkaline stresses, indicating their diverse roles in response to abiotic stress. In conclusion, our work will benefit for further revealing the biological roles of <i>GmCHYRs</i>.Bowei JiaYan WangDajian ZhangWanhong LiHongli CuiJun JinXiaoxi CaiYang ShenShengyang WuYongxia GuoMingzhe SunXiaoli SunMDPI AGarticleCHYRsoybeangenome-wide identificationexpression analysisabiotic stressBiology (General)QH301-705.5ChemistryQD1-999ENInternational Journal of Molecular Sciences, Vol 22, Iss 12192, p 12192 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	CHYR soybean genome-wide identification expression analysis abiotic stress Biology (General) QH301-705.5 Chemistry QD1-999
spellingShingle	CHYR soybean genome-wide identification expression analysis abiotic stress Biology (General) QH301-705.5 Chemistry QD1-999 Bowei Jia Yan Wang Dajian Zhang Wanhong Li Hongli Cui Jun Jin Xiaoxi Cai Yang Shen Shengyang Wu Yongxia Guo Mingzhe Sun Xiaoli Sun Genome-Wide Identification, Characterization and Expression Analysis of Soybean <em>CHYR</em> Gene Family
description	The <i>CHYR</i> (CHY ZINC-FINGER AND RING FINGER PROTEIN) proteins have been functionally characterized in iron regulation and stress response in <i>Arabidopsis</i>, rice and <i>Populus</i>. However, their roles in soybean have not yet been systematically investigated. Here, in this study, 16 <i>GmCHYR</i> genes with conserved Zinc_ribbon, CHY zinc finger and Ring finger domains were obtained and divided into three groups. Moreover, additional 2–3 hemerythrin domains could be found in the N terminus of Group III. Phylogenetic and homology analysis of <i>CHYRs</i> in green plants indicated that three groups might originate from different ancestors. Expectedly, <i>GmCHYR</i> genes shared similar conserved domains/motifs distribution within the same group. Gene expression analysis uncovered their special expression patterns in different soybean tissues/organs and under various abiotic stresses. Group I and II members were mainly involved in salt and alkaline stresses. The expression of Group III members was induced/repressed by dehydration, salt and alkaline stresses, indicating their diverse roles in response to abiotic stress. In conclusion, our work will benefit for further revealing the biological roles of <i>GmCHYRs</i>.
format	article
author	Bowei Jia Yan Wang Dajian Zhang Wanhong Li Hongli Cui Jun Jin Xiaoxi Cai Yang Shen Shengyang Wu Yongxia Guo Mingzhe Sun Xiaoli Sun
author_facet	Bowei Jia Yan Wang Dajian Zhang Wanhong Li Hongli Cui Jun Jin Xiaoxi Cai Yang Shen Shengyang Wu Yongxia Guo Mingzhe Sun Xiaoli Sun
author_sort	Bowei Jia
title	Genome-Wide Identification, Characterization and Expression Analysis of Soybean <em>CHYR</em> Gene Family
title_short	Genome-Wide Identification, Characterization and Expression Analysis of Soybean <em>CHYR</em> Gene Family
title_full	Genome-Wide Identification, Characterization and Expression Analysis of Soybean <em>CHYR</em> Gene Family
title_fullStr	Genome-Wide Identification, Characterization and Expression Analysis of Soybean <em>CHYR</em> Gene Family
title_full_unstemmed	Genome-Wide Identification, Characterization and Expression Analysis of Soybean <em>CHYR</em> Gene Family
title_sort	genome-wide identification, characterization and expression analysis of soybean <em>chyr</em> gene family
publisher	MDPI AG
publishDate	2021
url	https://doaj.org/article/0453050722f64e66918b85e8f8e4070f
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Genome-Wide Identification, Characterization and Expression Analysis of Soybean <em>CHYR</em> Gene Family

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