Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups

Kaleb Abram and Zulema Udaondo et al. analyze over 100,000 publicly available E. coli and Shigella genome sequences and perform a Mash-based analysis to identify 14 unique phylogroups. Their results reveal that most of the sequenced E. coli genomes belong to four distinct phylogroups.

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Autores principales:	Kaleb Abram, Zulema Udaondo, Carissa Bleker, Visanu Wanchai, Trudy M. Wassenaar, Michael S. Robeson, David W. Ussery
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2021
Materias:	Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/04d6eb542d164c8788a178b4adabb5b0
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spelling	oai:doaj.org-article:04d6eb542d164c8788a178b4adabb5b02021-12-02T10:47:53ZMash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups10.1038/s42003-020-01626-52399-3642https://doaj.org/article/04d6eb542d164c8788a178b4adabb5b02021-01-01T00:00:00Zhttps://doi.org/10.1038/s42003-020-01626-5https://doaj.org/toc/2399-3642Kaleb Abram and Zulema Udaondo et al. analyze over 100,000 publicly available E. coli and Shigella genome sequences and perform a Mash-based analysis to identify 14 unique phylogroups. Their results reveal that most of the sequenced E. coli genomes belong to four distinct phylogroups.Kaleb AbramZulema UdaondoCarissa BlekerVisanu WanchaiTrudy M. WassenaarMichael S. RobesonDavid W. UsseryNature PortfolioarticleBiology (General)QH301-705.5ENCommunications Biology, Vol 4, Iss 1, Pp 1-12 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Biology (General) QH301-705.5
spellingShingle	Biology (General) QH301-705.5 Kaleb Abram Zulema Udaondo Carissa Bleker Visanu Wanchai Trudy M. Wassenaar Michael S. Robeson David W. Ussery Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups
description	Kaleb Abram and Zulema Udaondo et al. analyze over 100,000 publicly available E. coli and Shigella genome sequences and perform a Mash-based analysis to identify 14 unique phylogroups. Their results reveal that most of the sequenced E. coli genomes belong to four distinct phylogroups.
format	article
author	Kaleb Abram Zulema Udaondo Carissa Bleker Visanu Wanchai Trudy M. Wassenaar Michael S. Robeson David W. Ussery
author_facet	Kaleb Abram Zulema Udaondo Carissa Bleker Visanu Wanchai Trudy M. Wassenaar Michael S. Robeson David W. Ussery
author_sort	Kaleb Abram
title	Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups
title_short	Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups
title_full	Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups
title_fullStr	Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups
title_full_unstemmed	Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups
title_sort	mash-based analyses of escherichia coli genomes reveal 14 distinct phylogroups
publisher	Nature Portfolio
publishDate	2021
url	https://doaj.org/article/04d6eb542d164c8788a178b4adabb5b0
work_keys_str_mv	AT kalebabram mashbasedanalysesofescherichiacoligenomesreveal14distinctphylogroups AT zulemaudaondo mashbasedanalysesofescherichiacoligenomesreveal14distinctphylogroups AT carissableker mashbasedanalysesofescherichiacoligenomesreveal14distinctphylogroups AT visanuwanchai mashbasedanalysesofescherichiacoligenomesreveal14distinctphylogroups AT trudymwassenaar mashbasedanalysesofescherichiacoligenomesreveal14distinctphylogroups AT michaelsrobeson mashbasedanalysesofescherichiacoligenomesreveal14distinctphylogroups AT davidwussery mashbasedanalysesofescherichiacoligenomesreveal14distinctphylogroups
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Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups

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