ODFM, an omics data resource from microorganisms associated with fermented foods

Abstract ODFM is a data management system that integrates comprehensive omics information for microorganisms associated with various fermented foods, additive ingredients, and seasonings (e.g. kimchi, Korean fermented vegetables, fermented seafood, solar salt, soybean paste, vinegar, beer, cheese, s...

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Autores principales:	Tae Woong Whon, Seung Woo Ahn, Sungjin Yang, Joon Yong Kim, Yeon Bee Kim, Yujin Kim, Ji-Man Hong, Hojin Jung, Yoon-E Choi, Se Hee Lee, Seong Woon Roh
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2021
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/054ff387d8e245f5bf5f2321fe00f21e
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spelling	oai:doaj.org-article:054ff387d8e245f5bf5f2321fe00f21e2021-12-02T13:39:29ZODFM, an omics data resource from microorganisms associated with fermented foods10.1038/s41597-021-00895-x2052-4463https://doaj.org/article/054ff387d8e245f5bf5f2321fe00f21e2021-04-01T00:00:00Zhttps://doi.org/10.1038/s41597-021-00895-xhttps://doaj.org/toc/2052-4463Abstract ODFM is a data management system that integrates comprehensive omics information for microorganisms associated with various fermented foods, additive ingredients, and seasonings (e.g. kimchi, Korean fermented vegetables, fermented seafood, solar salt, soybean paste, vinegar, beer, cheese, sake, and yogurt). The ODFM archives genome, metagenome, metataxonome, and (meta)transcriptome sequences of fermented food-associated bacteria, archaea, eukaryotic microorganisms, and viruses; 131 bacterial, 38 archaeal, and 28 eukaryotic genomes are now available to users. The ODFM provides both the Basic Local Alignment Search Tool search-based local alignment function as well as average nucleotide identity-based genetic relatedness measurement, enabling gene diversity and taxonomic analyses of an input query against the database. Genome sequences and annotation results of microorganisms are directly downloadable, and the microbial strains registered in the archive library will be available from our culture collection of fermented food-associated microorganisms. The ODFM is a comprehensive database that covers the genomes of an entire microbiome within a specific food ecosystem, providing basic information to evaluate microbial isolates as candidate fermentation starters for fermented food production.Tae Woong WhonSeung Woo AhnSungjin YangJoon Yong KimYeon Bee KimYujin KimJi-Man HongHojin JungYoon-E ChoiSe Hee LeeSeong Woon RohNature PortfolioarticleScienceQENScientific Data, Vol 8, Iss 1, Pp 1-10 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Tae Woong Whon Seung Woo Ahn Sungjin Yang Joon Yong Kim Yeon Bee Kim Yujin Kim Ji-Man Hong Hojin Jung Yoon-E Choi Se Hee Lee Seong Woon Roh ODFM, an omics data resource from microorganisms associated with fermented foods
description	Abstract ODFM is a data management system that integrates comprehensive omics information for microorganisms associated with various fermented foods, additive ingredients, and seasonings (e.g. kimchi, Korean fermented vegetables, fermented seafood, solar salt, soybean paste, vinegar, beer, cheese, sake, and yogurt). The ODFM archives genome, metagenome, metataxonome, and (meta)transcriptome sequences of fermented food-associated bacteria, archaea, eukaryotic microorganisms, and viruses; 131 bacterial, 38 archaeal, and 28 eukaryotic genomes are now available to users. The ODFM provides both the Basic Local Alignment Search Tool search-based local alignment function as well as average nucleotide identity-based genetic relatedness measurement, enabling gene diversity and taxonomic analyses of an input query against the database. Genome sequences and annotation results of microorganisms are directly downloadable, and the microbial strains registered in the archive library will be available from our culture collection of fermented food-associated microorganisms. The ODFM is a comprehensive database that covers the genomes of an entire microbiome within a specific food ecosystem, providing basic information to evaluate microbial isolates as candidate fermentation starters for fermented food production.
format	article
author	Tae Woong Whon Seung Woo Ahn Sungjin Yang Joon Yong Kim Yeon Bee Kim Yujin Kim Ji-Man Hong Hojin Jung Yoon-E Choi Se Hee Lee Seong Woon Roh
author_facet	Tae Woong Whon Seung Woo Ahn Sungjin Yang Joon Yong Kim Yeon Bee Kim Yujin Kim Ji-Man Hong Hojin Jung Yoon-E Choi Se Hee Lee Seong Woon Roh
author_sort	Tae Woong Whon
title	ODFM, an omics data resource from microorganisms associated with fermented foods
title_short	ODFM, an omics data resource from microorganisms associated with fermented foods
title_full	ODFM, an omics data resource from microorganisms associated with fermented foods
title_fullStr	ODFM, an omics data resource from microorganisms associated with fermented foods
title_full_unstemmed	ODFM, an omics data resource from microorganisms associated with fermented foods
title_sort	odfm, an omics data resource from microorganisms associated with fermented foods
publisher	Nature Portfolio
publishDate	2021
url	https://doaj.org/article/054ff387d8e245f5bf5f2321fe00f21e
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ODFM, an omics data resource from microorganisms associated with fermented foods

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