Comparative plastomics of Amaryllidaceae: inverted repeat expansion and the degradation of the ndh genes in Strumaria truncata Jacq.

Amaryllidaceae is a widespread and distinctive plant family contributing both food and ornamental plants. Here we present an initial survey of plastomes across the family and report on both structural rearrangements and gene losses. Most plastomes in the family are of similar gene arrangement and co...

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Autores principales:	Kálmán Könyves, Jordan Bilsborrow, Maria D. Christodoulou, Alastair Culham, John David
Formato:	article
Lenguaje:	EN
Publicado:	PeerJ Inc. 2021
Materias:	Amaryllidaceae IR expansion ndh loss Strumaria Medicine R
Acceso en línea:	https://doaj.org/article/0fb8d9a32cd94ec795d3fb872bf0c867
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spelling	oai:doaj.org-article:0fb8d9a32cd94ec795d3fb872bf0c8672021-11-14T15:05:09ZComparative plastomics of Amaryllidaceae: inverted repeat expansion and the degradation of the ndh genes in Strumaria truncata Jacq.10.7717/peerj.124002167-8359https://doaj.org/article/0fb8d9a32cd94ec795d3fb872bf0c8672021-11-01T00:00:00Zhttps://peerj.com/articles/12400.pdfhttps://peerj.com/articles/12400/https://doaj.org/toc/2167-8359Amaryllidaceae is a widespread and distinctive plant family contributing both food and ornamental plants. Here we present an initial survey of plastomes across the family and report on both structural rearrangements and gene losses. Most plastomes in the family are of similar gene arrangement and content however some taxa have shown gains in plastome length while in several taxa there is evidence of gene loss. Strumaria truncata shows a substantial loss of ndh family genes while three other taxa show loss of cemA, which has been reported only rarely. Our sparse sampling of the family has detected sufficient variation to suggest further sampling across the family could be a rich source of new information on plastome variation and evolution.Kálmán KönyvesJordan BilsborrowMaria D. ChristodoulouAlastair CulhamJohn DavidPeerJ Inc.articleAmaryllidaceaeIR expansionndh lossStrumariaMedicineRENPeerJ, Vol 9, p e12400 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Amaryllidaceae IR expansion ndh loss Strumaria Medicine R
spellingShingle	Amaryllidaceae IR expansion ndh loss Strumaria Medicine R Kálmán Könyves Jordan Bilsborrow Maria D. Christodoulou Alastair Culham John David Comparative plastomics of Amaryllidaceae: inverted repeat expansion and the degradation of the ndh genes in Strumaria truncata Jacq.
description	Amaryllidaceae is a widespread and distinctive plant family contributing both food and ornamental plants. Here we present an initial survey of plastomes across the family and report on both structural rearrangements and gene losses. Most plastomes in the family are of similar gene arrangement and content however some taxa have shown gains in plastome length while in several taxa there is evidence of gene loss. Strumaria truncata shows a substantial loss of ndh family genes while three other taxa show loss of cemA, which has been reported only rarely. Our sparse sampling of the family has detected sufficient variation to suggest further sampling across the family could be a rich source of new information on plastome variation and evolution.
format	article
author	Kálmán Könyves Jordan Bilsborrow Maria D. Christodoulou Alastair Culham John David
author_facet	Kálmán Könyves Jordan Bilsborrow Maria D. Christodoulou Alastair Culham John David
author_sort	Kálmán Könyves
title	Comparative plastomics of Amaryllidaceae: inverted repeat expansion and the degradation of the ndh genes in Strumaria truncata Jacq.
title_short	Comparative plastomics of Amaryllidaceae: inverted repeat expansion and the degradation of the ndh genes in Strumaria truncata Jacq.
title_full	Comparative plastomics of Amaryllidaceae: inverted repeat expansion and the degradation of the ndh genes in Strumaria truncata Jacq.
title_fullStr	Comparative plastomics of Amaryllidaceae: inverted repeat expansion and the degradation of the ndh genes in Strumaria truncata Jacq.
title_full_unstemmed	Comparative plastomics of Amaryllidaceae: inverted repeat expansion and the degradation of the ndh genes in Strumaria truncata Jacq.
title_sort	comparative plastomics of amaryllidaceae: inverted repeat expansion and the degradation of the ndh genes in strumaria truncata jacq.
publisher	PeerJ Inc.
publishDate	2021
url	https://doaj.org/article/0fb8d9a32cd94ec795d3fb872bf0c867
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Comparative plastomics of Amaryllidaceae: inverted repeat expansion and the degradation of the ndh genes in Strumaria truncata Jacq.

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