Smooth 2D manifold extraction from 3D image stack

Maximum Intensity Projection is a common tool to represent 3D biological imaging data in a 2D space, but it creates artefacts. Here the authors develop Smooth Manifold Extraction, an ImageJ/Fiji plugin, to preserve local spatial relationships when extracting the content of a 3D volume to a 2D space.

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Detalles Bibliográficos
Autores principales:	Asm Shihavuddin, Sreetama Basu, Elton Rexhepaj, Felipe Delestro, Nikita Menezes, Séverine M Sigoillot, Elaine Del Nery, Fekrije Selimi, Nathalie Spassky, Auguste Genovesio
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2017
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/16d349324b684635b89081ab88120e08
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id	oai:doaj.org-article:16d349324b684635b89081ab88120e08
record_format	dspace
spelling	oai:doaj.org-article:16d349324b684635b89081ab88120e082021-12-02T14:41:10ZSmooth 2D manifold extraction from 3D image stack10.1038/ncomms155542041-1723https://doaj.org/article/16d349324b684635b89081ab88120e082017-05-01T00:00:00Zhttps://doi.org/10.1038/ncomms15554https://doaj.org/toc/2041-1723Maximum Intensity Projection is a common tool to represent 3D biological imaging data in a 2D space, but it creates artefacts. Here the authors develop Smooth Manifold Extraction, an ImageJ/Fiji plugin, to preserve local spatial relationships when extracting the content of a 3D volume to a 2D space.Asm ShihavuddinSreetama BasuElton RexhepajFelipe DelestroNikita MenezesSéverine M SigoillotElaine Del NeryFekrije SelimiNathalie SpasskyAuguste GenovesioNature PortfolioarticleScienceQENNature Communications, Vol 8, Iss 1, Pp 1-8 (2017)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Asm Shihavuddin Sreetama Basu Elton Rexhepaj Felipe Delestro Nikita Menezes Séverine M Sigoillot Elaine Del Nery Fekrije Selimi Nathalie Spassky Auguste Genovesio Smooth 2D manifold extraction from 3D image stack
description	Maximum Intensity Projection is a common tool to represent 3D biological imaging data in a 2D space, but it creates artefacts. Here the authors develop Smooth Manifold Extraction, an ImageJ/Fiji plugin, to preserve local spatial relationships when extracting the content of a 3D volume to a 2D space.
format	article
author	Asm Shihavuddin Sreetama Basu Elton Rexhepaj Felipe Delestro Nikita Menezes Séverine M Sigoillot Elaine Del Nery Fekrije Selimi Nathalie Spassky Auguste Genovesio
author_facet	Asm Shihavuddin Sreetama Basu Elton Rexhepaj Felipe Delestro Nikita Menezes Séverine M Sigoillot Elaine Del Nery Fekrije Selimi Nathalie Spassky Auguste Genovesio
author_sort	Asm Shihavuddin
title	Smooth 2D manifold extraction from 3D image stack
title_short	Smooth 2D manifold extraction from 3D image stack
title_full	Smooth 2D manifold extraction from 3D image stack
title_fullStr	Smooth 2D manifold extraction from 3D image stack
title_full_unstemmed	Smooth 2D manifold extraction from 3D image stack
title_sort	smooth 2d manifold extraction from 3d image stack
publisher	Nature Portfolio
publishDate	2017
url	https://doaj.org/article/16d349324b684635b89081ab88120e08
work_keys_str_mv	AT asmshihavuddin smooth2dmanifoldextractionfrom3dimagestack AT sreetamabasu smooth2dmanifoldextractionfrom3dimagestack AT eltonrexhepaj smooth2dmanifoldextractionfrom3dimagestack AT felipedelestro smooth2dmanifoldextractionfrom3dimagestack AT nikitamenezes smooth2dmanifoldextractionfrom3dimagestack AT severinemsigoillot smooth2dmanifoldextractionfrom3dimagestack AT elainedelnery smooth2dmanifoldextractionfrom3dimagestack AT fekrijeselimi smooth2dmanifoldextractionfrom3dimagestack AT nathaliespassky smooth2dmanifoldextractionfrom3dimagestack AT augustegenovesio smooth2dmanifoldextractionfrom3dimagestack
_version_	1718389975584604160

Smooth 2D manifold extraction from 3D image stack

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