Genome-wide survey of switchgrass NACs family provides new insights into motif and structure arrangements and reveals stress-related and tissue-specific NACs
Abstract NAC proteins comprise of a plant-specific transcription factor (TF) family and play important roles in plant development and stress responses. Switchgrass (Panicum virgatum) is the prime candidate and model bioenergy grass across the world. Excavating agronomically valuable genes is importa...
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Nature Portfolio
2017
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oai:doaj.org-article:16e858797d944b059fe693d6067072372021-12-02T12:32:31ZGenome-wide survey of switchgrass NACs family provides new insights into motif and structure arrangements and reveals stress-related and tissue-specific NACs10.1038/s41598-017-03435-z2045-2322https://doaj.org/article/16e858797d944b059fe693d6067072372017-06-01T00:00:00Zhttps://doi.org/10.1038/s41598-017-03435-zhttps://doaj.org/toc/2045-2322Abstract NAC proteins comprise of a plant-specific transcription factor (TF) family and play important roles in plant development and stress responses. Switchgrass (Panicum virgatum) is the prime candidate and model bioenergy grass across the world. Excavating agronomically valuable genes is important for switchgrass molecular breeding. In this study, a total of 251 switchgrass NAC (PvNACs) family genes clustered into 19 subgroups were analyzed, and those potentially involved in stress response or tissue-specific expression patterns were pinpointed. Specifically, 27 PvNACs were considered as abiotic stress-related including four membrane-associated ones. Among 40 tissue-specific PvNACs expression patterns eight factors were identified that might be relevant for lignin biosynthesis and/or secondary cell wall formation. Conserved functional domains and motifs were also identified among the PvNACs and potential association between these motifs and their predicted functions were proposed, that might encourage experimental studies to use PvNACs as possible targets to improve biomass production and abiotic stress tolerance.Haidong YanAiling ZhangYuntian YeBin XuJing ChenXiaoyan HeChengran WangSifan ZhouXinquan ZhangYan PengXiao MaYanhong YanLinkai HuangNature PortfolioarticleMedicineRScienceQENScientific Reports, Vol 7, Iss 1, Pp 1-15 (2017) |
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Medicine R Science Q Haidong Yan Ailing Zhang Yuntian Ye Bin Xu Jing Chen Xiaoyan He Chengran Wang Sifan Zhou Xinquan Zhang Yan Peng Xiao Ma Yanhong Yan Linkai Huang Genome-wide survey of switchgrass NACs family provides new insights into motif and structure arrangements and reveals stress-related and tissue-specific NACs |
| description |
Abstract NAC proteins comprise of a plant-specific transcription factor (TF) family and play important roles in plant development and stress responses. Switchgrass (Panicum virgatum) is the prime candidate and model bioenergy grass across the world. Excavating agronomically valuable genes is important for switchgrass molecular breeding. In this study, a total of 251 switchgrass NAC (PvNACs) family genes clustered into 19 subgroups were analyzed, and those potentially involved in stress response or tissue-specific expression patterns were pinpointed. Specifically, 27 PvNACs were considered as abiotic stress-related including four membrane-associated ones. Among 40 tissue-specific PvNACs expression patterns eight factors were identified that might be relevant for lignin biosynthesis and/or secondary cell wall formation. Conserved functional domains and motifs were also identified among the PvNACs and potential association between these motifs and their predicted functions were proposed, that might encourage experimental studies to use PvNACs as possible targets to improve biomass production and abiotic stress tolerance. |
| format |
article |
| author |
Haidong Yan Ailing Zhang Yuntian Ye Bin Xu Jing Chen Xiaoyan He Chengran Wang Sifan Zhou Xinquan Zhang Yan Peng Xiao Ma Yanhong Yan Linkai Huang |
| author_facet |
Haidong Yan Ailing Zhang Yuntian Ye Bin Xu Jing Chen Xiaoyan He Chengran Wang Sifan Zhou Xinquan Zhang Yan Peng Xiao Ma Yanhong Yan Linkai Huang |
| author_sort |
Haidong Yan |
| title |
Genome-wide survey of switchgrass NACs family provides new insights into motif and structure arrangements and reveals stress-related and tissue-specific NACs |
| title_short |
Genome-wide survey of switchgrass NACs family provides new insights into motif and structure arrangements and reveals stress-related and tissue-specific NACs |
| title_full |
Genome-wide survey of switchgrass NACs family provides new insights into motif and structure arrangements and reveals stress-related and tissue-specific NACs |
| title_fullStr |
Genome-wide survey of switchgrass NACs family provides new insights into motif and structure arrangements and reveals stress-related and tissue-specific NACs |
| title_full_unstemmed |
Genome-wide survey of switchgrass NACs family provides new insights into motif and structure arrangements and reveals stress-related and tissue-specific NACs |
| title_sort |
genome-wide survey of switchgrass nacs family provides new insights into motif and structure arrangements and reveals stress-related and tissue-specific nacs |
| publisher |
Nature Portfolio |
| publishDate |
2017 |
| url |
https://doaj.org/article/16e858797d944b059fe693d606707237 |
| work_keys_str_mv |
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1718394023483277312 |