Exome sequencing identifies DLG1 as a novel gene for potential susceptibility to Crohn's disease in a Chinese family study.
<h4>Background</h4>Genetic variants make some contributions to inflammatory bowel disease (IBD), including Crohn's disease (CD) and ulcerative colitis (UC). More than 100 susceptibility loci were identified in Western IBD studies, but susceptibility gene has not been found in Chines...
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2014
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oai:doaj.org-article:1aa739da2d104a26b0f10bc2b5df671a2021-11-18T08:15:19ZExome sequencing identifies DLG1 as a novel gene for potential susceptibility to Crohn's disease in a Chinese family study.1932-620310.1371/journal.pone.0099807https://doaj.org/article/1aa739da2d104a26b0f10bc2b5df671a2014-01-01T00:00:00Zhttps://www.ncbi.nlm.nih.gov/pmc/articles/pmid/24937328/?tool=EBIhttps://doaj.org/toc/1932-6203<h4>Background</h4>Genetic variants make some contributions to inflammatory bowel disease (IBD), including Crohn's disease (CD) and ulcerative colitis (UC). More than 100 susceptibility loci were identified in Western IBD studies, but susceptibility gene has not been found in Chinese IBD patients till now. Sequencing of individuals with an IBD family history is a powerful approach toward our understanding of the genetics and pathogenesis of IBD. The aim of this study, which focuses on a Han Chinese CD family, is to identify high-risk variants and potentially novel loci using whole exome sequencing technique.<h4>Methods</h4>Exome sequence data from 4 individuals belonging to a same family were analyzed using bioinformatics methods to narrow down the variants associated with CD. The potential risk genes were further analyzed by genotyping and Sanger sequencing in family members, additional 401 healthy controls (HC), 278 sporadic CD patients, 123 UC cases, a pair of monozygotic CD twins and another Chinese CD family.<h4>Results</h4>From the CD family in which the father and daughter were affected, we identified a novel single nucleotide variant (SNV) c.374T>C (p.I125T) in exon 4 of discs large homolog 1 (DLG1), a gene has been reported to play multiple roles in cell proliferation, T cell polarity and T cell receptor signaling. After genotyping among case and controls, a PLINK analysis showed the variant was of significance (P<0.05). 4 CD patients of the other Chinese family bore another non-synonymous variant c.833G>A (p.R278Q) in exon 9 of DLG1.<h4>Conclusions</h4>We have discovered novel genetic variants in the coding regions of DLG1 gene, the results support that DLG1 is a novel potential susceptibility gene for CD in Chinese patients.Shufang XuFeng ZhouJinsheng TaoLu SongSiew Chien NgXiaobing WangLiping ChenFengming YiZhihua RanRui ZhouBing XiaPublic Library of Science (PLoS)articleMedicineRScienceQENPLoS ONE, Vol 9, Iss 6, p e99807 (2014) |
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Medicine R Science Q Shufang Xu Feng Zhou Jinsheng Tao Lu Song Siew Chien Ng Xiaobing Wang Liping Chen Fengming Yi Zhihua Ran Rui Zhou Bing Xia Exome sequencing identifies DLG1 as a novel gene for potential susceptibility to Crohn's disease in a Chinese family study. |
| description |
<h4>Background</h4>Genetic variants make some contributions to inflammatory bowel disease (IBD), including Crohn's disease (CD) and ulcerative colitis (UC). More than 100 susceptibility loci were identified in Western IBD studies, but susceptibility gene has not been found in Chinese IBD patients till now. Sequencing of individuals with an IBD family history is a powerful approach toward our understanding of the genetics and pathogenesis of IBD. The aim of this study, which focuses on a Han Chinese CD family, is to identify high-risk variants and potentially novel loci using whole exome sequencing technique.<h4>Methods</h4>Exome sequence data from 4 individuals belonging to a same family were analyzed using bioinformatics methods to narrow down the variants associated with CD. The potential risk genes were further analyzed by genotyping and Sanger sequencing in family members, additional 401 healthy controls (HC), 278 sporadic CD patients, 123 UC cases, a pair of monozygotic CD twins and another Chinese CD family.<h4>Results</h4>From the CD family in which the father and daughter were affected, we identified a novel single nucleotide variant (SNV) c.374T>C (p.I125T) in exon 4 of discs large homolog 1 (DLG1), a gene has been reported to play multiple roles in cell proliferation, T cell polarity and T cell receptor signaling. After genotyping among case and controls, a PLINK analysis showed the variant was of significance (P<0.05). 4 CD patients of the other Chinese family bore another non-synonymous variant c.833G>A (p.R278Q) in exon 9 of DLG1.<h4>Conclusions</h4>We have discovered novel genetic variants in the coding regions of DLG1 gene, the results support that DLG1 is a novel potential susceptibility gene for CD in Chinese patients. |
| format |
article |
| author |
Shufang Xu Feng Zhou Jinsheng Tao Lu Song Siew Chien Ng Xiaobing Wang Liping Chen Fengming Yi Zhihua Ran Rui Zhou Bing Xia |
| author_facet |
Shufang Xu Feng Zhou Jinsheng Tao Lu Song Siew Chien Ng Xiaobing Wang Liping Chen Fengming Yi Zhihua Ran Rui Zhou Bing Xia |
| author_sort |
Shufang Xu |
| title |
Exome sequencing identifies DLG1 as a novel gene for potential susceptibility to Crohn's disease in a Chinese family study. |
| title_short |
Exome sequencing identifies DLG1 as a novel gene for potential susceptibility to Crohn's disease in a Chinese family study. |
| title_full |
Exome sequencing identifies DLG1 as a novel gene for potential susceptibility to Crohn's disease in a Chinese family study. |
| title_fullStr |
Exome sequencing identifies DLG1 as a novel gene for potential susceptibility to Crohn's disease in a Chinese family study. |
| title_full_unstemmed |
Exome sequencing identifies DLG1 as a novel gene for potential susceptibility to Crohn's disease in a Chinese family study. |
| title_sort |
exome sequencing identifies dlg1 as a novel gene for potential susceptibility to crohn's disease in a chinese family study. |
| publisher |
Public Library of Science (PLoS) |
| publishDate |
2014 |
| url |
https://doaj.org/article/1aa739da2d104a26b0f10bc2b5df671a |
| work_keys_str_mv |
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