iPiG: integrating peptide spectrum matches into genome browser visualizations.

Proteogenomic approaches have gained increasing popularity, however it is still difficult to integrate mass spectrometry identifications with genomic data due to differing data formats. To address this difficulty, we introduce iPiG as a tool for the integration of peptide identifications from mass s...

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Autores principales:	Mathias Kuhring, Bernhard Y Renard
Formato:	article
Lenguaje:	EN
Publicado:	Public Library of Science (PLoS) 2012
Materias:	Medicine R Science Q
Acceso en línea:	https://doaj.org/article/1e9ecddc44674c8b94ce2f18209aaf1c
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id	oai:doaj.org-article:1e9ecddc44674c8b94ce2f18209aaf1c
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spelling	oai:doaj.org-article:1e9ecddc44674c8b94ce2f18209aaf1c2021-11-18T08:06:27ZiPiG: integrating peptide spectrum matches into genome browser visualizations.1932-620310.1371/journal.pone.0050246https://doaj.org/article/1e9ecddc44674c8b94ce2f18209aaf1c2012-01-01T00:00:00Zhttps://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23226516/pdf/?tool=EBIhttps://doaj.org/toc/1932-6203Proteogenomic approaches have gained increasing popularity, however it is still difficult to integrate mass spectrometry identifications with genomic data due to differing data formats. To address this difficulty, we introduce iPiG as a tool for the integration of peptide identifications from mass spectrometry experiments into existing genome browser visualizations. Thereby, the concurrent analysis of proteomic and genomic data is simplified and proteomic results can directly be compared to genomic data. iPiG is freely available from https://sourceforge.net/projects/ipig/. It is implemented in Java and can be run as a stand-alone tool with a graphical user-interface or integrated into existing workflows. Supplementary data are available at PLOS ONE online.Mathias KuhringBernhard Y RenardPublic Library of Science (PLoS)articleMedicineRScienceQENPLoS ONE, Vol 7, Iss 12, p e50246 (2012)
institution	DOAJ
collection	DOAJ
language	EN
topic	Medicine R Science Q
spellingShingle	Medicine R Science Q Mathias Kuhring Bernhard Y Renard iPiG: integrating peptide spectrum matches into genome browser visualizations.
description	Proteogenomic approaches have gained increasing popularity, however it is still difficult to integrate mass spectrometry identifications with genomic data due to differing data formats. To address this difficulty, we introduce iPiG as a tool for the integration of peptide identifications from mass spectrometry experiments into existing genome browser visualizations. Thereby, the concurrent analysis of proteomic and genomic data is simplified and proteomic results can directly be compared to genomic data. iPiG is freely available from https://sourceforge.net/projects/ipig/. It is implemented in Java and can be run as a stand-alone tool with a graphical user-interface or integrated into existing workflows. Supplementary data are available at PLOS ONE online.
format	article
author	Mathias Kuhring Bernhard Y Renard
author_facet	Mathias Kuhring Bernhard Y Renard
author_sort	Mathias Kuhring
title	iPiG: integrating peptide spectrum matches into genome browser visualizations.
title_short	iPiG: integrating peptide spectrum matches into genome browser visualizations.
title_full	iPiG: integrating peptide spectrum matches into genome browser visualizations.
title_fullStr	iPiG: integrating peptide spectrum matches into genome browser visualizations.
title_full_unstemmed	iPiG: integrating peptide spectrum matches into genome browser visualizations.
title_sort	ipig: integrating peptide spectrum matches into genome browser visualizations.
publisher	Public Library of Science (PLoS)
publishDate	2012
url	https://doaj.org/article/1e9ecddc44674c8b94ce2f18209aaf1c
work_keys_str_mv	AT mathiaskuhring ipigintegratingpeptidespectrummatchesintogenomebrowservisualizations AT bernhardyrenard ipigintegratingpeptidespectrummatchesintogenomebrowservisualizations
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iPiG: integrating peptide spectrum matches into genome browser visualizations.

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