Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus
Trait introgression requires universal markers, but cross-species transferability of current SNP markers can be as low as 2%. Here, the authors use an AmpSeq haplotype strategy targeting the collinear core genome for marker development and show transferability increases to 91.4% in the Vitis genus.
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Nature Portfolio
2020
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oai:doaj.org-article:21a2618c0b69454ca4900854e8f7b3502021-12-02T17:32:27ZHaplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus10.1038/s41467-019-14280-12041-1723https://doaj.org/article/21a2618c0b69454ca4900854e8f7b3502020-01-01T00:00:00Zhttps://doi.org/10.1038/s41467-019-14280-1https://doaj.org/toc/2041-1723Trait introgression requires universal markers, but cross-species transferability of current SNP markers can be as low as 2%. Here, the authors use an AmpSeq haplotype strategy targeting the collinear core genome for marker development and show transferability increases to 91.4% in the Vitis genus.Cheng ZouAvinash KarnBruce ReischAllen NguyenYongming SunYun BaoMichael S. CampbellDeanna ChurchStephen WilliamsXia XuCraig A. LedbetterSagar PatelAnne FennellJeffrey C. GlaubitzMatthew ClarkDoreen WareJason P. LondoQi SunLance Cadle-DavidsonNature PortfolioarticleScienceQENNature Communications, Vol 11, Iss 1, Pp 1-11 (2020) |
| institution |
DOAJ |
| collection |
DOAJ |
| language |
EN |
| topic |
Science Q |
| spellingShingle |
Science Q Cheng Zou Avinash Karn Bruce Reisch Allen Nguyen Yongming Sun Yun Bao Michael S. Campbell Deanna Church Stephen Williams Xia Xu Craig A. Ledbetter Sagar Patel Anne Fennell Jeffrey C. Glaubitz Matthew Clark Doreen Ware Jason P. Londo Qi Sun Lance Cadle-Davidson Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus |
| description |
Trait introgression requires universal markers, but cross-species transferability of current SNP markers can be as low as 2%. Here, the authors use an AmpSeq haplotype strategy targeting the collinear core genome for marker development and show transferability increases to 91.4% in the Vitis genus. |
| format |
article |
| author |
Cheng Zou Avinash Karn Bruce Reisch Allen Nguyen Yongming Sun Yun Bao Michael S. Campbell Deanna Church Stephen Williams Xia Xu Craig A. Ledbetter Sagar Patel Anne Fennell Jeffrey C. Glaubitz Matthew Clark Doreen Ware Jason P. Londo Qi Sun Lance Cadle-Davidson |
| author_facet |
Cheng Zou Avinash Karn Bruce Reisch Allen Nguyen Yongming Sun Yun Bao Michael S. Campbell Deanna Church Stephen Williams Xia Xu Craig A. Ledbetter Sagar Patel Anne Fennell Jeffrey C. Glaubitz Matthew Clark Doreen Ware Jason P. Londo Qi Sun Lance Cadle-Davidson |
| author_sort |
Cheng Zou |
| title |
Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus |
| title_short |
Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus |
| title_full |
Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus |
| title_fullStr |
Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus |
| title_full_unstemmed |
Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus |
| title_sort |
haplotyping the vitis collinear core genome with rhampseq improves marker transferability in a diverse genus |
| publisher |
Nature Portfolio |
| publishDate |
2020 |
| url |
https://doaj.org/article/21a2618c0b69454ca4900854e8f7b350 |
| work_keys_str_mv |
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