Genetic diversity and relationship of husk tomato (Physalis spp.) from East Java Province revealed by SSR markers

Abstract. Sadiyah H, Ashari S, Waluyo B, Soegianto A. 2021. Genetic diversity and relationship of husk tomato (Physalis spp.) from East Java Province revealed by SSR markers. Biodiversitas 22: 184-192. This study aimed to investigate the genetic diversity and relationship of Physalis spp. from East...

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Autores principales:	halimatus sadiyah, Sumeru Ashari, Budi Waluyo, andy Soegianto
Formato:	article
Lenguaje:	EN
Publicado:	MBI & UNS Solo 2020
Materias:	diversity, genetic structure, husk tomato, physalis spp., ssr Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/2392850092a14ffd88ec8e4f809d6700
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spelling	oai:doaj.org-article:2392850092a14ffd88ec8e4f809d67002021-11-22T00:53:57ZGenetic diversity and relationship of husk tomato (Physalis spp.) from East Java Province revealed by SSR markers1412-033X2085-472210.13057/biodiv/d220124https://doaj.org/article/2392850092a14ffd88ec8e4f809d67002020-12-01T00:00:00Zhttps://smujo.id/biodiv/article/view/7130https://doaj.org/toc/1412-033Xhttps://doaj.org/toc/2085-4722Abstract. Sadiyah H, Ashari S, Waluyo B, Soegianto A. 2021. Genetic diversity and relationship of husk tomato (Physalis spp.) from East Java Province revealed by SSR markers. Biodiversitas 22: 184-192. This study aimed to investigate the genetic diversity and relationship of Physalis spp. from East Java province, Indonesia. A total of the 33 Physalis accessions was analyzed employing 16 SSR markers. AMOVA, UPGMA clustering, and non-parametric ANOVA analyses were applied. The results showed Genetic diversity in this sample showed lower levels (He =0.171), as compared to other studies of Physalis that used different molecular markers. The dendrogram revealed the presence of five groups, the different species belong to different small groups. The two major groups consist of accessions originated from eastern Java and Madura Island, indicating that there is no significant difference between accessions from both areas although there is geographic isolation in the form of the strait. It is consistent with the low population differentiation and high genetic drift. The AMOVA revealed that 96% of the total variation came from the within-population (among accession), reflect that the accessions used in this study have high variation and valuable for plant improvement through breeding programs. It is recommended that future evaluation studies include more accession from minor accessions detected in the sample of this study to better represent the genetic diversity available in this crop.halimatus sadiyahSumeru AshariBudi Waluyoandy SoegiantoMBI & UNS Soloarticlediversity, genetic structure, husk tomato, physalis spp., ssrBiology (General)QH301-705.5ENBiodiversitas, Vol 22, Iss 1 (2020)
institution	DOAJ
collection	DOAJ
language	EN
topic	diversity, genetic structure, husk tomato, physalis spp., ssr Biology (General) QH301-705.5
spellingShingle	diversity, genetic structure, husk tomato, physalis spp., ssr Biology (General) QH301-705.5 halimatus sadiyah Sumeru Ashari Budi Waluyo andy Soegianto Genetic diversity and relationship of husk tomato (Physalis spp.) from East Java Province revealed by SSR markers
description	Abstract. Sadiyah H, Ashari S, Waluyo B, Soegianto A. 2021. Genetic diversity and relationship of husk tomato (Physalis spp.) from East Java Province revealed by SSR markers. Biodiversitas 22: 184-192. This study aimed to investigate the genetic diversity and relationship of Physalis spp. from East Java province, Indonesia. A total of the 33 Physalis accessions was analyzed employing 16 SSR markers. AMOVA, UPGMA clustering, and non-parametric ANOVA analyses were applied. The results showed Genetic diversity in this sample showed lower levels (He =0.171), as compared to other studies of Physalis that used different molecular markers. The dendrogram revealed the presence of five groups, the different species belong to different small groups. The two major groups consist of accessions originated from eastern Java and Madura Island, indicating that there is no significant difference between accessions from both areas although there is geographic isolation in the form of the strait. It is consistent with the low population differentiation and high genetic drift. The AMOVA revealed that 96% of the total variation came from the within-population (among accession), reflect that the accessions used in this study have high variation and valuable for plant improvement through breeding programs. It is recommended that future evaluation studies include more accession from minor accessions detected in the sample of this study to better represent the genetic diversity available in this crop.
format	article
author	halimatus sadiyah Sumeru Ashari Budi Waluyo andy Soegianto
author_facet	halimatus sadiyah Sumeru Ashari Budi Waluyo andy Soegianto
author_sort	halimatus sadiyah
title	Genetic diversity and relationship of husk tomato (Physalis spp.) from East Java Province revealed by SSR markers
title_short	Genetic diversity and relationship of husk tomato (Physalis spp.) from East Java Province revealed by SSR markers
title_full	Genetic diversity and relationship of husk tomato (Physalis spp.) from East Java Province revealed by SSR markers
title_fullStr	Genetic diversity and relationship of husk tomato (Physalis spp.) from East Java Province revealed by SSR markers
title_full_unstemmed	Genetic diversity and relationship of husk tomato (Physalis spp.) from East Java Province revealed by SSR markers
title_sort	genetic diversity and relationship of husk tomato (physalis spp.) from east java province revealed by ssr markers
publisher	MBI & UNS Solo
publishDate	2020
url	https://doaj.org/article/2392850092a14ffd88ec8e4f809d6700
work_keys_str_mv	AT halimatussadiyah geneticdiversityandrelationshipofhusktomatophysalissppfromeastjavaprovincerevealedbyssrmarkers AT sumeruashari geneticdiversityandrelationshipofhusktomatophysalissppfromeastjavaprovincerevealedbyssrmarkers AT budiwaluyo geneticdiversityandrelationshipofhusktomatophysalissppfromeastjavaprovincerevealedbyssrmarkers AT andysoegianto geneticdiversityandrelationshipofhusktomatophysalissppfromeastjavaprovincerevealedbyssrmarkers
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Genetic diversity and relationship of husk tomato (Physalis spp.) from East Java Province revealed by SSR markers

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