Comparative analysis of twelve mitogenomes of Caliscelidae (Hemiptera: Fulgoromorpha) and their phylogenetic implications

Here, the complete mitochondrial genomes (mitogenomes) of 12 Caliscelidae species, Augilina tetraina, Augilina triaina, Symplana brevistrata, Symplana lii, Neosymplana vittatum, Pseudosymplanella nigrifasciata, Symplanella brevicephala, Symplanella unipuncta, Augilodes binghami, Cylindratus longicep...

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Autores principales:	Nian Gong, Lin Yang, Xiangsheng Chen
Formato:	article
Lenguaje:	EN
Publicado:	PeerJ Inc. 2021
Materias:	Caliscelini Peltonotellini Ommatidiotinae Mitogenome Phylogenetics Medicine R
Acceso en línea:	https://doaj.org/article/2404fa337bcc4ff0932f7d638d5d0ed7
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spelling	oai:doaj.org-article:2404fa337bcc4ff0932f7d638d5d0ed72021-11-18T15:05:31ZComparative analysis of twelve mitogenomes of Caliscelidae (Hemiptera: Fulgoromorpha) and their phylogenetic implications10.7717/peerj.124652167-8359https://doaj.org/article/2404fa337bcc4ff0932f7d638d5d0ed72021-11-01T00:00:00Zhttps://peerj.com/articles/12465.pdfhttps://peerj.com/articles/12465/https://doaj.org/toc/2167-8359Here, the complete mitochondrial genomes (mitogenomes) of 12 Caliscelidae species, Augilina tetraina, Augilina triaina, Symplana brevistrata, Symplana lii, Neosymplana vittatum, Pseudosymplanella nigrifasciata, Symplanella brevicephala, Symplanella unipuncta, Augilodes binghami, Cylindratus longicephalus, Caliscelis shandongensis, and Peltonotellus sp., were determined and comparatively analyzed. The genomes varied from 15,424 to 16,746 bp in size, comprising 37 mitochondrial genes and an A+T-rich region. The typical gene content and arrangement were similar to those of most Fulgoroidea species. The nucleotide compositions of the mitogenomes were biased toward A/T. All protein-coding genes (PCGs) started with a canonical ATN or GTG codon and ended with TAN or an incomplete stop codon, single T. Among 13 PCGs in 16 reported Caliscelidae mitogenomes, cox1 and atp8 showed the lowest and highest nucleotide diversity, respectively. All PCGs evolved under purifying selection, with atp8 considered a comparatively fast-evolving gene. Phylogenetic relationships were reconstructed based on 13 PCGs in 16 Caliscelidae species and five outgroups using maximum likelihood and Bayesian inference analyses. All species of Caliscelidae formed a steadily monophyletic group with high support. Peltonotellini was present at the basal position of the phylogenetic tree. Augilini was the sister group to Caliscelini and Peltonotellini.Nian GongLin YangXiangsheng ChenPeerJ Inc.articleCalisceliniPeltonotelliniOmmatidiotinaeMitogenomePhylogeneticsMedicineRENPeerJ, Vol 9, p e12465 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Caliscelini Peltonotellini Ommatidiotinae Mitogenome Phylogenetics Medicine R
spellingShingle	Caliscelini Peltonotellini Ommatidiotinae Mitogenome Phylogenetics Medicine R Nian Gong Lin Yang Xiangsheng Chen Comparative analysis of twelve mitogenomes of Caliscelidae (Hemiptera: Fulgoromorpha) and their phylogenetic implications
description	Here, the complete mitochondrial genomes (mitogenomes) of 12 Caliscelidae species, Augilina tetraina, Augilina triaina, Symplana brevistrata, Symplana lii, Neosymplana vittatum, Pseudosymplanella nigrifasciata, Symplanella brevicephala, Symplanella unipuncta, Augilodes binghami, Cylindratus longicephalus, Caliscelis shandongensis, and Peltonotellus sp., were determined and comparatively analyzed. The genomes varied from 15,424 to 16,746 bp in size, comprising 37 mitochondrial genes and an A+T-rich region. The typical gene content and arrangement were similar to those of most Fulgoroidea species. The nucleotide compositions of the mitogenomes were biased toward A/T. All protein-coding genes (PCGs) started with a canonical ATN or GTG codon and ended with TAN or an incomplete stop codon, single T. Among 13 PCGs in 16 reported Caliscelidae mitogenomes, cox1 and atp8 showed the lowest and highest nucleotide diversity, respectively. All PCGs evolved under purifying selection, with atp8 considered a comparatively fast-evolving gene. Phylogenetic relationships were reconstructed based on 13 PCGs in 16 Caliscelidae species and five outgroups using maximum likelihood and Bayesian inference analyses. All species of Caliscelidae formed a steadily monophyletic group with high support. Peltonotellini was present at the basal position of the phylogenetic tree. Augilini was the sister group to Caliscelini and Peltonotellini.
format	article
author	Nian Gong Lin Yang Xiangsheng Chen
author_facet	Nian Gong Lin Yang Xiangsheng Chen
author_sort	Nian Gong
title	Comparative analysis of twelve mitogenomes of Caliscelidae (Hemiptera: Fulgoromorpha) and their phylogenetic implications
title_short	Comparative analysis of twelve mitogenomes of Caliscelidae (Hemiptera: Fulgoromorpha) and their phylogenetic implications
title_full	Comparative analysis of twelve mitogenomes of Caliscelidae (Hemiptera: Fulgoromorpha) and their phylogenetic implications
title_fullStr	Comparative analysis of twelve mitogenomes of Caliscelidae (Hemiptera: Fulgoromorpha) and their phylogenetic implications
title_full_unstemmed	Comparative analysis of twelve mitogenomes of Caliscelidae (Hemiptera: Fulgoromorpha) and their phylogenetic implications
title_sort	comparative analysis of twelve mitogenomes of caliscelidae (hemiptera: fulgoromorpha) and their phylogenetic implications
publisher	PeerJ Inc.
publishDate	2021
url	https://doaj.org/article/2404fa337bcc4ff0932f7d638d5d0ed7
work_keys_str_mv	AT niangong comparativeanalysisoftwelvemitogenomesofcaliscelidaehemipterafulgoromorphaandtheirphylogeneticimplications AT linyang comparativeanalysisoftwelvemitogenomesofcaliscelidaehemipterafulgoromorphaandtheirphylogeneticimplications AT xiangshengchen comparativeanalysisoftwelvemitogenomesofcaliscelidaehemipterafulgoromorphaandtheirphylogeneticimplications
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Comparative analysis of twelve mitogenomes of Caliscelidae (Hemiptera: Fulgoromorpha) and their phylogenetic implications

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