A draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae)

Amphibian genomes are usually challenging to assemble due to their large genome size and high repeat content. The Limnodynastidae is a family of frogs native to Australia, Tasmania and New Guinea. As an anuran lineage that successfully diversified on the Australian continent, it represents an import...

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Autores principales:	Qiye Li, Qunfei Guo, Yang Zhou, Huishuang Tan, Terry Bertozzi, Yuanzhen Zhu, Ji Li, Stephen Donnellan, Guojie Zhang
Formato:	article
Lenguaje:	EN
Publicado:	GigaScience Press 2020
Materias:	genetics and genomics animal genetics evolutionary biology Electronic computers. Computer science QA75.5-76.95
Acceso en línea:	https://doaj.org/article/249dc7e263f441fb875a912be321af46
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spelling	oai:doaj.org-article:249dc7e263f441fb875a912be321af462021-12-02T14:17:27ZA draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae)doi:10.46471/gigabyte.22709-4715https://doaj.org/article/249dc7e263f441fb875a912be321af462020-07-01T00:00:00Zhttps://gigabytejournal.com/articles/2https://doaj.org/toc/2709-4715Amphibian genomes are usually challenging to assemble due to their large genome size and high repeat content. The Limnodynastidae is a family of frogs native to Australia, Tasmania and New Guinea. As an anuran lineage that successfully diversified on the Australian continent, it represents an important lineage in the amphibian tree of life but lacks reference genomes. Here we sequenced and annotated the genome of the eastern banjo frog Limnodynastes dumerilii dumerilii to fill this gap. The total length of the genome assembly is 2.38 Gb with a scaffold N50 of 285.9 kb. We identified 1.21 Gb of non-redundant sequences as repetitive elements and annotated 24,548 protein-coding genes in the assembly. BUSCO assessment indicated that more than 94% of the expected vertebrate genes were present in the genome assembly and the gene set. We anticipate that this annotated genome assembly will advance the future study of anuran phylogeny and amphibian genome evolution.Qiye LiQunfei GuoYang Zhou Huishuang TanTerry BertozziYuanzhen ZhuJi LiStephen DonnellanGuojie ZhangGigaScience Pressarticlegenetics and genomicsanimal geneticsevolutionary biologyElectronic computers. Computer scienceQA75.5-76.95ENGigaByte, Vol 1 (2020)
institution	DOAJ
collection	DOAJ
language	EN
topic	genetics and genomics animal genetics evolutionary biology Electronic computers. Computer science QA75.5-76.95
spellingShingle	genetics and genomics animal genetics evolutionary biology Electronic computers. Computer science QA75.5-76.95 Qiye Li Qunfei Guo Yang Zhou Huishuang Tan Terry Bertozzi Yuanzhen Zhu Ji Li Stephen Donnellan Guojie Zhang A draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae)
description	Amphibian genomes are usually challenging to assemble due to their large genome size and high repeat content. The Limnodynastidae is a family of frogs native to Australia, Tasmania and New Guinea. As an anuran lineage that successfully diversified on the Australian continent, it represents an important lineage in the amphibian tree of life but lacks reference genomes. Here we sequenced and annotated the genome of the eastern banjo frog Limnodynastes dumerilii dumerilii to fill this gap. The total length of the genome assembly is 2.38 Gb with a scaffold N50 of 285.9 kb. We identified 1.21 Gb of non-redundant sequences as repetitive elements and annotated 24,548 protein-coding genes in the assembly. BUSCO assessment indicated that more than 94% of the expected vertebrate genes were present in the genome assembly and the gene set. We anticipate that this annotated genome assembly will advance the future study of anuran phylogeny and amphibian genome evolution.
format	article
author	Qiye Li Qunfei Guo Yang Zhou Huishuang Tan Terry Bertozzi Yuanzhen Zhu Ji Li Stephen Donnellan Guojie Zhang
author_facet	Qiye Li Qunfei Guo Yang Zhou Huishuang Tan Terry Bertozzi Yuanzhen Zhu Ji Li Stephen Donnellan Guojie Zhang
author_sort	Qiye Li
title	A draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae)
title_short	A draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae)
title_full	A draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae)
title_fullStr	A draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae)
title_full_unstemmed	A draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae)
title_sort	draft genome assembly of the eastern banjo frog limnodynastes dumerilii dumerilii (anura: limnodynastidae)
publisher	GigaScience Press
publishDate	2020
url	https://doaj.org/article/249dc7e263f441fb875a912be321af46
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A draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae)

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