Identification, classification, and characterization of AP2/ERF superfamily genes in Masson pine (Pinus massoniana Lamb.)

Abstract Transcription factors (TFs) play crucial regulatory roles in controlling the expression of the target genes in plants. APETALA2/Ethylene-responsive factors (AP2/ERF) are part of a large superfamily of plant-specific TFs whose members are involved in the control of plant metabolism, developm...

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Autores principales:	Peihuang Zhu, Yu Chen, Jinfeng Zhang, Fan Wu, Xiaofeng Wang, Ting Pan, Qiang Wei, Yanping Hao, Xuelian Chen, Chunwu Jiang, Kongshu Ji
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2021
Materias:	Medicine R Science Q
Acceso en línea:	https://doaj.org/article/256f84ec4f6d467d924b3cfbdc80251e
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spelling	oai:doaj.org-article:256f84ec4f6d467d924b3cfbdc80251e2021-12-02T15:54:05ZIdentification, classification, and characterization of AP2/ERF superfamily genes in Masson pine (Pinus massoniana Lamb.)10.1038/s41598-021-84855-w2045-2322https://doaj.org/article/256f84ec4f6d467d924b3cfbdc80251e2021-03-01T00:00:00Zhttps://doi.org/10.1038/s41598-021-84855-whttps://doaj.org/toc/2045-2322Abstract Transcription factors (TFs) play crucial regulatory roles in controlling the expression of the target genes in plants. APETALA2/Ethylene-responsive factors (AP2/ERF) are part of a large superfamily of plant-specific TFs whose members are involved in the control of plant metabolism, development and responses to various biotic and abiotic stresses. However, the AP2/ERF superfamily has not been identified systematically in Masson pine (Pinus massoniana), which is one of the most important conifer in southern China. Therefore, we performed systematic identification of the AP2/ERF superfamily using transcriptome sequencing data from Masson pine. In the current study, we obtained 88 members of the AP2/ERF superfamily. All PmAP2/ERF members could be classified into 3 main families, AP2 (7 members), RAV (7 members), ERF (73 members) families, and a soloist protein. Subcellular localization assays suggested that two members of PmAP2/ERF were nuclear proteins. Based on pine wood nematode (PWN) inoculated transcriptome and qPCR analysis, we found that many members of PmAP2/ERF could respond to PWN inoculation and PWN related treatment conditions in vitro. In general, members of the AP2/ERF superfamily play an important role in the response of Masson pine responds to PWN. Furthermore, the roles of the AP2/ERF superfamily in other physiological activities of Masson pine remain to be further studied.Peihuang ZhuYu ChenJinfeng ZhangFan WuXiaofeng WangTing PanQiang WeiYanping HaoXuelian ChenChunwu JiangKongshu JiNature PortfolioarticleMedicineRScienceQENScientific Reports, Vol 11, Iss 1, Pp 1-11 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Medicine R Science Q
spellingShingle	Medicine R Science Q Peihuang Zhu Yu Chen Jinfeng Zhang Fan Wu Xiaofeng Wang Ting Pan Qiang Wei Yanping Hao Xuelian Chen Chunwu Jiang Kongshu Ji Identification, classification, and characterization of AP2/ERF superfamily genes in Masson pine (Pinus massoniana Lamb.)
description	Abstract Transcription factors (TFs) play crucial regulatory roles in controlling the expression of the target genes in plants. APETALA2/Ethylene-responsive factors (AP2/ERF) are part of a large superfamily of plant-specific TFs whose members are involved in the control of plant metabolism, development and responses to various biotic and abiotic stresses. However, the AP2/ERF superfamily has not been identified systematically in Masson pine (Pinus massoniana), which is one of the most important conifer in southern China. Therefore, we performed systematic identification of the AP2/ERF superfamily using transcriptome sequencing data from Masson pine. In the current study, we obtained 88 members of the AP2/ERF superfamily. All PmAP2/ERF members could be classified into 3 main families, AP2 (7 members), RAV (7 members), ERF (73 members) families, and a soloist protein. Subcellular localization assays suggested that two members of PmAP2/ERF were nuclear proteins. Based on pine wood nematode (PWN) inoculated transcriptome and qPCR analysis, we found that many members of PmAP2/ERF could respond to PWN inoculation and PWN related treatment conditions in vitro. In general, members of the AP2/ERF superfamily play an important role in the response of Masson pine responds to PWN. Furthermore, the roles of the AP2/ERF superfamily in other physiological activities of Masson pine remain to be further studied.
format	article
author	Peihuang Zhu Yu Chen Jinfeng Zhang Fan Wu Xiaofeng Wang Ting Pan Qiang Wei Yanping Hao Xuelian Chen Chunwu Jiang Kongshu Ji
author_facet	Peihuang Zhu Yu Chen Jinfeng Zhang Fan Wu Xiaofeng Wang Ting Pan Qiang Wei Yanping Hao Xuelian Chen Chunwu Jiang Kongshu Ji
author_sort	Peihuang Zhu
title	Identification, classification, and characterization of AP2/ERF superfamily genes in Masson pine (Pinus massoniana Lamb.)
title_short	Identification, classification, and characterization of AP2/ERF superfamily genes in Masson pine (Pinus massoniana Lamb.)
title_full	Identification, classification, and characterization of AP2/ERF superfamily genes in Masson pine (Pinus massoniana Lamb.)
title_fullStr	Identification, classification, and characterization of AP2/ERF superfamily genes in Masson pine (Pinus massoniana Lamb.)
title_full_unstemmed	Identification, classification, and characterization of AP2/ERF superfamily genes in Masson pine (Pinus massoniana Lamb.)
title_sort	identification, classification, and characterization of ap2/erf superfamily genes in masson pine (pinus massoniana lamb.)
publisher	Nature Portfolio
publishDate	2021
url	https://doaj.org/article/256f84ec4f6d467d924b3cfbdc80251e
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Identification, classification, and characterization of AP2/ERF superfamily genes in Masson pine (Pinus massoniana Lamb.)

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