Complete sequence and comparative analysis of the chloroplast genome of coconut palm (Cocos nucifera).

Coconut, a member of the palm family (Arecaceae), is one of the most economically important trees used by mankind. Despite its diverse morphology, coconut is recognized taxonomically as only a single species (Cocos nucifera L.). There are two major coconut varieties, tall and dwarf, the latter of wh...

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Autores principales:	Ya-Yi Huang, Antonius J M Matzke, Marjori Matzke
Formato:	article
Lenguaje:	EN
Publicado:	Public Library of Science (PLoS) 2013
Materias:	Medicine R Science Q
Acceso en línea:	https://doaj.org/article/2bd767e4e4cf40d596d990df466480fb
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spelling	oai:doaj.org-article:2bd767e4e4cf40d596d990df466480fb2021-11-18T08:57:30ZComplete sequence and comparative analysis of the chloroplast genome of coconut palm (Cocos nucifera).1932-620310.1371/journal.pone.0074736https://doaj.org/article/2bd767e4e4cf40d596d990df466480fb2013-01-01T00:00:00Zhttps://www.ncbi.nlm.nih.gov/pmc/articles/pmid/24023703/pdf/?tool=EBIhttps://doaj.org/toc/1932-6203Coconut, a member of the palm family (Arecaceae), is one of the most economically important trees used by mankind. Despite its diverse morphology, coconut is recognized taxonomically as only a single species (Cocos nucifera L.). There are two major coconut varieties, tall and dwarf, the latter of which displays traits resulting from selection by humans. We report here the complete chloroplast (cp) genome of a dwarf coconut plant, and describe the gene content and organization, inverted repeat fluctuations, repeated sequence structure, and occurrence of RNA editing. Phylogenetic relationships of monocots were inferred based on 47 chloroplast protein-coding genes. Potential nodes for events of gene duplication and pseudogenization related to inverted repeat fluctuation were mapped onto the tree using parsimony criteria. We compare our findings with those from other palm species for which complete cp genome sequences are available.Ya-Yi HuangAntonius J M MatzkeMarjori MatzkePublic Library of Science (PLoS)articleMedicineRScienceQENPLoS ONE, Vol 8, Iss 8, p e74736 (2013)
institution	DOAJ
collection	DOAJ
language	EN
topic	Medicine R Science Q
spellingShingle	Medicine R Science Q Ya-Yi Huang Antonius J M Matzke Marjori Matzke Complete sequence and comparative analysis of the chloroplast genome of coconut palm (Cocos nucifera).
description	Coconut, a member of the palm family (Arecaceae), is one of the most economically important trees used by mankind. Despite its diverse morphology, coconut is recognized taxonomically as only a single species (Cocos nucifera L.). There are two major coconut varieties, tall and dwarf, the latter of which displays traits resulting from selection by humans. We report here the complete chloroplast (cp) genome of a dwarf coconut plant, and describe the gene content and organization, inverted repeat fluctuations, repeated sequence structure, and occurrence of RNA editing. Phylogenetic relationships of monocots were inferred based on 47 chloroplast protein-coding genes. Potential nodes for events of gene duplication and pseudogenization related to inverted repeat fluctuation were mapped onto the tree using parsimony criteria. We compare our findings with those from other palm species for which complete cp genome sequences are available.
format	article
author	Ya-Yi Huang Antonius J M Matzke Marjori Matzke
author_facet	Ya-Yi Huang Antonius J M Matzke Marjori Matzke
author_sort	Ya-Yi Huang
title	Complete sequence and comparative analysis of the chloroplast genome of coconut palm (Cocos nucifera).
title_short	Complete sequence and comparative analysis of the chloroplast genome of coconut palm (Cocos nucifera).
title_full	Complete sequence and comparative analysis of the chloroplast genome of coconut palm (Cocos nucifera).
title_fullStr	Complete sequence and comparative analysis of the chloroplast genome of coconut palm (Cocos nucifera).
title_full_unstemmed	Complete sequence and comparative analysis of the chloroplast genome of coconut palm (Cocos nucifera).
title_sort	complete sequence and comparative analysis of the chloroplast genome of coconut palm (cocos nucifera).
publisher	Public Library of Science (PLoS)
publishDate	2013
url	https://doaj.org/article/2bd767e4e4cf40d596d990df466480fb
work_keys_str_mv	AT yayihuang completesequenceandcomparativeanalysisofthechloroplastgenomeofcoconutpalmcocosnucifera AT antoniusjmmatzke completesequenceandcomparativeanalysisofthechloroplastgenomeofcoconutpalmcocosnucifera AT marjorimatzke completesequenceandcomparativeanalysisofthechloroplastgenomeofcoconutpalmcocosnucifera
_version_	1718421071494905856

Complete sequence and comparative analysis of the chloroplast genome of coconut palm (Cocos nucifera).

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