Ontology-driven weak supervision for clinical entity classification in electronic health records
In the electronic health record, using clinical notes to identify entities such as disorders and their temporality can inform many important analyses. Here, the authors present a framework for weakly supervised entity classification using medical ontologies and expert-generated rules.
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Nature Portfolio
2021
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oai:doaj.org-article:2f95d01741cc4c879cc47cb28144da3f2021-12-02T18:17:51ZOntology-driven weak supervision for clinical entity classification in electronic health records10.1038/s41467-021-22328-42041-1723https://doaj.org/article/2f95d01741cc4c879cc47cb28144da3f2021-04-01T00:00:00Zhttps://doi.org/10.1038/s41467-021-22328-4https://doaj.org/toc/2041-1723In the electronic health record, using clinical notes to identify entities such as disorders and their temporality can inform many important analyses. Here, the authors present a framework for weakly supervised entity classification using medical ontologies and expert-generated rules.Jason A. FriesEthan SteinbergSaelig KhattarScott L. FlemingJose PosadaAlison CallahanNigam H. ShahNature PortfolioarticleScienceQENNature Communications, Vol 12, Iss 1, Pp 1-11 (2021) |
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Science Q Jason A. Fries Ethan Steinberg Saelig Khattar Scott L. Fleming Jose Posada Alison Callahan Nigam H. Shah Ontology-driven weak supervision for clinical entity classification in electronic health records |
description |
In the electronic health record, using clinical notes to identify entities such as disorders and their temporality can inform many important analyses. Here, the authors present a framework for weakly supervised entity classification using medical ontologies and expert-generated rules. |
format |
article |
author |
Jason A. Fries Ethan Steinberg Saelig Khattar Scott L. Fleming Jose Posada Alison Callahan Nigam H. Shah |
author_facet |
Jason A. Fries Ethan Steinberg Saelig Khattar Scott L. Fleming Jose Posada Alison Callahan Nigam H. Shah |
author_sort |
Jason A. Fries |
title |
Ontology-driven weak supervision for clinical entity classification in electronic health records |
title_short |
Ontology-driven weak supervision for clinical entity classification in electronic health records |
title_full |
Ontology-driven weak supervision for clinical entity classification in electronic health records |
title_fullStr |
Ontology-driven weak supervision for clinical entity classification in electronic health records |
title_full_unstemmed |
Ontology-driven weak supervision for clinical entity classification in electronic health records |
title_sort |
ontology-driven weak supervision for clinical entity classification in electronic health records |
publisher |
Nature Portfolio |
publishDate |
2021 |
url |
https://doaj.org/article/2f95d01741cc4c879cc47cb28144da3f |
work_keys_str_mv |
AT jasonafries ontologydrivenweaksupervisionforclinicalentityclassificationinelectronichealthrecords AT ethansteinberg ontologydrivenweaksupervisionforclinicalentityclassificationinelectronichealthrecords AT saeligkhattar ontologydrivenweaksupervisionforclinicalentityclassificationinelectronichealthrecords AT scottlfleming ontologydrivenweaksupervisionforclinicalentityclassificationinelectronichealthrecords AT joseposada ontologydrivenweaksupervisionforclinicalentityclassificationinelectronichealthrecords AT alisoncallahan ontologydrivenweaksupervisionforclinicalentityclassificationinelectronichealthrecords AT nigamhshah ontologydrivenweaksupervisionforclinicalentityclassificationinelectronichealthrecords |
_version_ |
1718378265268191232 |