Comprehensive Analysis of REST/NRSF Gene in Glioma and Its ceRNA Network Identification
We sought to clarify the clinical relationship between REST/NRSF expression and the prognosis of glioma and explore the REST-associated competitive endogenous RNA (ceRNA) network in glioma. We downloaded RNA-seq, miRNA-seq and correlated clinical data of 670 glioma patients from The Cancer Genome At...
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Frontiers Media S.A.
2021
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oai:doaj.org-article:2fed8282f43a4308b97f173b9956eb822021-11-11T06:13:28ZComprehensive Analysis of REST/NRSF Gene in Glioma and Its ceRNA Network Identification2296-858X10.3389/fmed.2021.739624https://doaj.org/article/2fed8282f43a4308b97f173b9956eb822021-11-01T00:00:00Zhttps://www.frontiersin.org/articles/10.3389/fmed.2021.739624/fullhttps://doaj.org/toc/2296-858XWe sought to clarify the clinical relationship between REST/NRSF expression and the prognosis of glioma and explore the REST-associated competitive endogenous RNA (ceRNA) network in glioma. We downloaded RNA-seq, miRNA-seq and correlated clinical data of 670 glioma patients from The Cancer Genome Atlas and analyzed the correlation between REST expression, clinical characteristics and prognosis. Differentially expressed genes (DEGs) were identified with DESeq2 and analyzed with Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) using the Profiler package. Starbase was used to explore the regulatory interaction between REST and miRNAs or LncRNAs. The lncRNA-miRNA-REST ceRNA network was constructed with Cytoscape. RT-qPCR, WB, CCK8, wound-healing, and luciferase assays were performed to validate the ceRNA network. Results showed that REST expression was significantly higher in glioma patients than normal samples. Higher REST expression was significantly associated with worse overall survival, progression-free interval, and worse disease-specific survival in glioma patients. The DEGs of mRNA, miRNA, and lncRNA were identified, and GO and KEGG enrichment analyses were performed. Finally, REST-associated ceRNA networks, including NR2F2-AS1-miR129-REST and HOTAIRM1-miR137-REST, were experimentally validated. Thus, REST may be a prognostic biomarker and therapeutic target in glioma, and its regulatory network validated in this study may provide insights into glioma's molecular regulatory mechanisms.Yulian ZhangYulian ZhangQi WangZai WangChuanpeng ZhangChuanpeng ZhangXiaoli XuJun XuHongxiang RenXu ShaoXueke ZhenLi ZhangLi ZhangLi ZhangYanbing YuYanbing YuYanbing YuFrontiers Media S.A.articleREST (RE-1 silencing transcription factor)gliomatherapeutic targetceRNAexperiment validationMedicine (General)R5-920ENFrontiers in Medicine, Vol 8 (2021) |
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DOAJ |
| collection |
DOAJ |
| language |
EN |
| topic |
REST (RE-1 silencing transcription factor) glioma therapeutic target ceRNA experiment validation Medicine (General) R5-920 |
| spellingShingle |
REST (RE-1 silencing transcription factor) glioma therapeutic target ceRNA experiment validation Medicine (General) R5-920 Yulian Zhang Yulian Zhang Qi Wang Zai Wang Chuanpeng Zhang Chuanpeng Zhang Xiaoli Xu Jun Xu Hongxiang Ren Xu Shao Xueke Zhen Li Zhang Li Zhang Li Zhang Yanbing Yu Yanbing Yu Yanbing Yu Comprehensive Analysis of REST/NRSF Gene in Glioma and Its ceRNA Network Identification |
| description |
We sought to clarify the clinical relationship between REST/NRSF expression and the prognosis of glioma and explore the REST-associated competitive endogenous RNA (ceRNA) network in glioma. We downloaded RNA-seq, miRNA-seq and correlated clinical data of 670 glioma patients from The Cancer Genome Atlas and analyzed the correlation between REST expression, clinical characteristics and prognosis. Differentially expressed genes (DEGs) were identified with DESeq2 and analyzed with Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) using the Profiler package. Starbase was used to explore the regulatory interaction between REST and miRNAs or LncRNAs. The lncRNA-miRNA-REST ceRNA network was constructed with Cytoscape. RT-qPCR, WB, CCK8, wound-healing, and luciferase assays were performed to validate the ceRNA network. Results showed that REST expression was significantly higher in glioma patients than normal samples. Higher REST expression was significantly associated with worse overall survival, progression-free interval, and worse disease-specific survival in glioma patients. The DEGs of mRNA, miRNA, and lncRNA were identified, and GO and KEGG enrichment analyses were performed. Finally, REST-associated ceRNA networks, including NR2F2-AS1-miR129-REST and HOTAIRM1-miR137-REST, were experimentally validated. Thus, REST may be a prognostic biomarker and therapeutic target in glioma, and its regulatory network validated in this study may provide insights into glioma's molecular regulatory mechanisms. |
| format |
article |
| author |
Yulian Zhang Yulian Zhang Qi Wang Zai Wang Chuanpeng Zhang Chuanpeng Zhang Xiaoli Xu Jun Xu Hongxiang Ren Xu Shao Xueke Zhen Li Zhang Li Zhang Li Zhang Yanbing Yu Yanbing Yu Yanbing Yu |
| author_facet |
Yulian Zhang Yulian Zhang Qi Wang Zai Wang Chuanpeng Zhang Chuanpeng Zhang Xiaoli Xu Jun Xu Hongxiang Ren Xu Shao Xueke Zhen Li Zhang Li Zhang Li Zhang Yanbing Yu Yanbing Yu Yanbing Yu |
| author_sort |
Yulian Zhang |
| title |
Comprehensive Analysis of REST/NRSF Gene in Glioma and Its ceRNA Network Identification |
| title_short |
Comprehensive Analysis of REST/NRSF Gene in Glioma and Its ceRNA Network Identification |
| title_full |
Comprehensive Analysis of REST/NRSF Gene in Glioma and Its ceRNA Network Identification |
| title_fullStr |
Comprehensive Analysis of REST/NRSF Gene in Glioma and Its ceRNA Network Identification |
| title_full_unstemmed |
Comprehensive Analysis of REST/NRSF Gene in Glioma and Its ceRNA Network Identification |
| title_sort |
comprehensive analysis of rest/nrsf gene in glioma and its cerna network identification |
| publisher |
Frontiers Media S.A. |
| publishDate |
2021 |
| url |
https://doaj.org/article/2fed8282f43a4308b97f173b9956eb82 |
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