Molecular phylogenetics of Malesian Diospyros (Ebenaceae) based trnL-F spacer sequences

Abstract. Wanda IF, Djuita NR, Chikmawati T. 2021. Molecular phylogenetics of Malesian Diospyros (Ebenaceae) based trnL-F spacer sequences. Biodiversitas 22: 4106-4114. Diospyros is a genus composed of potential species as an economic commodity with high diversity. However, there is limited informat...

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Autores principales:	Irvan Fadli Wanda, Nina Ratna Djuita, TATIK CHIKMAWATI
Formato:	article
Lenguaje:	EN
Publicado:	MBI & UNS Solo 2021
Materias:	ebony, phylogenetics, malesia, trnl-f markers Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/342b90b85a02469db52b0522c2b4934a
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spelling	oai:doaj.org-article:342b90b85a02469db52b0522c2b4934a2021-11-22T12:18:55ZMolecular phylogenetics of Malesian Diospyros (Ebenaceae) based trnL-F spacer sequences1412-033X2085-472210.13057/biodiv/d220959https://doaj.org/article/342b90b85a02469db52b0522c2b4934a2021-09-01T00:00:00Zhttps://smujo.id/biodiv/article/view/8809https://doaj.org/toc/1412-033Xhttps://doaj.org/toc/2085-4722Abstract. Wanda IF, Djuita NR, Chikmawati T. 2021. Molecular phylogenetics of Malesian Diospyros (Ebenaceae) based trnL-F spacer sequences. Biodiversitas 22: 4106-4114. Diospyros is a genus composed of potential species as an economic commodity with high diversity. However, there is limited information on the phylogenetic relationship of this genus in the Malesian region. This study aimed to provide information on the species diversity through a DNA barcoding approach and revealing the phylogenetic information of Diospyros spp. in the Malesian region. This study used 20 Diospyros accessions from Bogor Botanical Garden collections, 40 Diospyros accessions, and four outgroup accessions obtained from the NCBI database. The DNA barcoding primer utilized comes from plastids, trnL-F intergenic spacer. The phylogenetic trees were constructed using the Maximum-Parsimony method. A total of 20 accessions of Diospyros were validated with sequence data on the genebank. The result showed that all accessions had relationships with 44 other Diospyros species globally. Here, we reported 10 new trnL-F intergenic spacer sequences of Malesian Diospyros species. A phylogenetic tree grouped 64 monophyletic Diospyros species into seven clades. The phylogenetic results supports the biogeographic hypothesis: the Malesian region, the Malesian-Caledonian Region, and Cosmopolite species in almost all bioregions.Irvan Fadli WandaNina Ratna DjuitaTATIK CHIKMAWATIMBI & UNS Soloarticleebony, phylogenetics, malesia, trnl-f markersBiology (General)QH301-705.5ENBiodiversitas, Vol 22, Iss 9 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	ebony, phylogenetics, malesia, trnl-f markers Biology (General) QH301-705.5
spellingShingle	ebony, phylogenetics, malesia, trnl-f markers Biology (General) QH301-705.5 Irvan Fadli Wanda Nina Ratna Djuita TATIK CHIKMAWATI Molecular phylogenetics of Malesian Diospyros (Ebenaceae) based trnL-F spacer sequences
description	Abstract. Wanda IF, Djuita NR, Chikmawati T. 2021. Molecular phylogenetics of Malesian Diospyros (Ebenaceae) based trnL-F spacer sequences. Biodiversitas 22: 4106-4114. Diospyros is a genus composed of potential species as an economic commodity with high diversity. However, there is limited information on the phylogenetic relationship of this genus in the Malesian region. This study aimed to provide information on the species diversity through a DNA barcoding approach and revealing the phylogenetic information of Diospyros spp. in the Malesian region. This study used 20 Diospyros accessions from Bogor Botanical Garden collections, 40 Diospyros accessions, and four outgroup accessions obtained from the NCBI database. The DNA barcoding primer utilized comes from plastids, trnL-F intergenic spacer. The phylogenetic trees were constructed using the Maximum-Parsimony method. A total of 20 accessions of Diospyros were validated with sequence data on the genebank. The result showed that all accessions had relationships with 44 other Diospyros species globally. Here, we reported 10 new trnL-F intergenic spacer sequences of Malesian Diospyros species. A phylogenetic tree grouped 64 monophyletic Diospyros species into seven clades. The phylogenetic results supports the biogeographic hypothesis: the Malesian region, the Malesian-Caledonian Region, and Cosmopolite species in almost all bioregions.
format	article
author	Irvan Fadli Wanda Nina Ratna Djuita TATIK CHIKMAWATI
author_facet	Irvan Fadli Wanda Nina Ratna Djuita TATIK CHIKMAWATI
author_sort	Irvan Fadli Wanda
title	Molecular phylogenetics of Malesian Diospyros (Ebenaceae) based trnL-F spacer sequences
title_short	Molecular phylogenetics of Malesian Diospyros (Ebenaceae) based trnL-F spacer sequences
title_full	Molecular phylogenetics of Malesian Diospyros (Ebenaceae) based trnL-F spacer sequences
title_fullStr	Molecular phylogenetics of Malesian Diospyros (Ebenaceae) based trnL-F spacer sequences
title_full_unstemmed	Molecular phylogenetics of Malesian Diospyros (Ebenaceae) based trnL-F spacer sequences
title_sort	molecular phylogenetics of malesian diospyros (ebenaceae) based trnl-f spacer sequences
publisher	MBI & UNS Solo
publishDate	2021
url	https://doaj.org/article/342b90b85a02469db52b0522c2b4934a
work_keys_str_mv	AT irvanfadliwanda molecularphylogeneticsofmalesiandiospyrosebenaceaebasedtrnlfspacersequences AT ninaratnadjuita molecularphylogeneticsofmalesiandiospyrosebenaceaebasedtrnlfspacersequences AT tatikchikmawati molecularphylogeneticsofmalesiandiospyrosebenaceaebasedtrnlfspacersequences
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Molecular phylogenetics of Malesian Diospyros (Ebenaceae) based trnL-F spacer sequences

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