Image Processing Filters for Grids of Cells Analogous to Filters Processing Grids of Pixels

Intra- and extra-cellular processes shape tissues together. For understanding how neighborhood relationships between cells play a role in this process, having image processing filters based on these relationships would be beneficial. Those operations are known and their application to microscopy ima...

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Autor principal:	Robert Haase
Formato:	article
Lenguaje:	EN
Publicado:	Frontiers Media S.A. 2021
Materias:	image processing cells tissues region adjacency graphs spatial analysis imagej Electronic computers. Computer science QA75.5-76.95
Acceso en línea:	https://doaj.org/article/35e945d83b144979a83dc4410c9559b3
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id	oai:doaj.org-article:35e945d83b144979a83dc4410c9559b3
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spelling	oai:doaj.org-article:35e945d83b144979a83dc4410c9559b32021-11-30T14:26:52ZImage Processing Filters for Grids of Cells Analogous to Filters Processing Grids of Pixels2624-989810.3389/fcomp.2021.774396https://doaj.org/article/35e945d83b144979a83dc4410c9559b32021-11-01T00:00:00Zhttps://www.frontiersin.org/articles/10.3389/fcomp.2021.774396/fullhttps://doaj.org/toc/2624-9898Intra- and extra-cellular processes shape tissues together. For understanding how neighborhood relationships between cells play a role in this process, having image processing filters based on these relationships would be beneficial. Those operations are known and their application to microscopy image data typically requires programming skills. User-friendly general purpose tools for pursuing image processing on a level of neighboring cells were yet missing. In this manuscript I demonstrate image processing filters which process grids of cells on tissue level and the analogy to their better known counter parts processing grids of pixels. The tools are available as part of free and open source software in the ImageJ/Fiji and napari ecosystems and their application does not require any programming experience.Robert Haase Robert Haase Frontiers Media S.A.articleimage processingcellstissuesregion adjacency graphsspatial analysisimagejElectronic computers. Computer scienceQA75.5-76.95ENFrontiers in Computer Science, Vol 3 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	image processing cells tissues region adjacency graphs spatial analysis imagej Electronic computers. Computer science QA75.5-76.95
spellingShingle	image processing cells tissues region adjacency graphs spatial analysis imagej Electronic computers. Computer science QA75.5-76.95 Robert Haase Robert Haase Image Processing Filters for Grids of Cells Analogous to Filters Processing Grids of Pixels
description	Intra- and extra-cellular processes shape tissues together. For understanding how neighborhood relationships between cells play a role in this process, having image processing filters based on these relationships would be beneficial. Those operations are known and their application to microscopy image data typically requires programming skills. User-friendly general purpose tools for pursuing image processing on a level of neighboring cells were yet missing. In this manuscript I demonstrate image processing filters which process grids of cells on tissue level and the analogy to their better known counter parts processing grids of pixels. The tools are available as part of free and open source software in the ImageJ/Fiji and napari ecosystems and their application does not require any programming experience.
format	article
author	Robert Haase Robert Haase
author_facet	Robert Haase Robert Haase
author_sort	Robert Haase
title	Image Processing Filters for Grids of Cells Analogous to Filters Processing Grids of Pixels
title_short	Image Processing Filters for Grids of Cells Analogous to Filters Processing Grids of Pixels
title_full	Image Processing Filters for Grids of Cells Analogous to Filters Processing Grids of Pixels
title_fullStr	Image Processing Filters for Grids of Cells Analogous to Filters Processing Grids of Pixels
title_full_unstemmed	Image Processing Filters for Grids of Cells Analogous to Filters Processing Grids of Pixels
title_sort	image processing filters for grids of cells analogous to filters processing grids of pixels
publisher	Frontiers Media S.A.
publishDate	2021
url	https://doaj.org/article/35e945d83b144979a83dc4410c9559b3
work_keys_str_mv	AT roberthaase imageprocessingfiltersforgridsofcellsanalogoustofiltersprocessinggridsofpixels AT roberthaase imageprocessingfiltersforgridsofcellsanalogoustofiltersprocessinggridsofpixels
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Image Processing Filters for Grids of Cells Analogous to Filters Processing Grids of Pixels

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