Metabolic pathways inferred from a bacterial marker gene illuminate ecological changes across South Pacific frontal boundaries

Extracting functional information from 16S rRNA data surveys would provide a valuable tool for large-scale functional ecology. Here, the authors use PICRUSt2 to infer metabolic functions from bacterial marker gene data across the South Pacific Ocean, and compare them with rate data, biomass estimato...

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Autores principales:	Eric J. Raes, Kristen Karsh, Swan L. S. Sow, Martin Ostrowski, Mark V. Brown, Jodie van de Kamp, Rita M. Franco-Santos, Levente Bodrossy, Anya M. Waite
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2021
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/362b32aa35f34f20bb4a3d17c20ebdbf
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id	oai:doaj.org-article:362b32aa35f34f20bb4a3d17c20ebdbf
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spelling	oai:doaj.org-article:362b32aa35f34f20bb4a3d17c20ebdbf2021-12-02T15:51:06ZMetabolic pathways inferred from a bacterial marker gene illuminate ecological changes across South Pacific frontal boundaries10.1038/s41467-021-22409-42041-1723https://doaj.org/article/362b32aa35f34f20bb4a3d17c20ebdbf2021-04-01T00:00:00Zhttps://doi.org/10.1038/s41467-021-22409-4https://doaj.org/toc/2041-1723Extracting functional information from 16S rRNA data surveys would provide a valuable tool for large-scale functional ecology. Here, the authors use PICRUSt2 to infer metabolic functions from bacterial marker gene data across the South Pacific Ocean, and compare them with rate data, biomass estimators and predictions based on shotgun metagenomes.Eric J. RaesKristen KarshSwan L. S. SowMartin OstrowskiMark V. BrownJodie van de KampRita M. Franco-SantosLevente BodrossyAnya M. WaiteNature PortfolioarticleScienceQENNature Communications, Vol 12, Iss 1, Pp 1-12 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Eric J. Raes Kristen Karsh Swan L. S. Sow Martin Ostrowski Mark V. Brown Jodie van de Kamp Rita M. Franco-Santos Levente Bodrossy Anya M. Waite Metabolic pathways inferred from a bacterial marker gene illuminate ecological changes across South Pacific frontal boundaries
description	Extracting functional information from 16S rRNA data surveys would provide a valuable tool for large-scale functional ecology. Here, the authors use PICRUSt2 to infer metabolic functions from bacterial marker gene data across the South Pacific Ocean, and compare them with rate data, biomass estimators and predictions based on shotgun metagenomes.
format	article
author	Eric J. Raes Kristen Karsh Swan L. S. Sow Martin Ostrowski Mark V. Brown Jodie van de Kamp Rita M. Franco-Santos Levente Bodrossy Anya M. Waite
author_facet	Eric J. Raes Kristen Karsh Swan L. S. Sow Martin Ostrowski Mark V. Brown Jodie van de Kamp Rita M. Franco-Santos Levente Bodrossy Anya M. Waite
author_sort	Eric J. Raes
title	Metabolic pathways inferred from a bacterial marker gene illuminate ecological changes across South Pacific frontal boundaries
title_short	Metabolic pathways inferred from a bacterial marker gene illuminate ecological changes across South Pacific frontal boundaries
title_full	Metabolic pathways inferred from a bacterial marker gene illuminate ecological changes across South Pacific frontal boundaries
title_fullStr	Metabolic pathways inferred from a bacterial marker gene illuminate ecological changes across South Pacific frontal boundaries
title_full_unstemmed	Metabolic pathways inferred from a bacterial marker gene illuminate ecological changes across South Pacific frontal boundaries
title_sort	metabolic pathways inferred from a bacterial marker gene illuminate ecological changes across south pacific frontal boundaries
publisher	Nature Portfolio
publishDate	2021
url	https://doaj.org/article/362b32aa35f34f20bb4a3d17c20ebdbf
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Metabolic pathways inferred from a bacterial marker gene illuminate ecological changes across South Pacific frontal boundaries

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