Mapping the bacterial metabolic niche space

The ecological niche of a given microbe is difficult to define, but can be approximated from the range of biochemical reactions encoded by its genome. Here the authors use these genomic data and analyze them using manifold learning, which generates a diffusion map of the metabolic niche space of ove...

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Autores principales:	Ashkaan K. Fahimipour, Thilo Gross
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2020
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/3eda249414684e81916914f3baedcb02
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spelling	oai:doaj.org-article:3eda249414684e81916914f3baedcb022021-12-02T18:51:09ZMapping the bacterial metabolic niche space10.1038/s41467-020-18695-z2041-1723https://doaj.org/article/3eda249414684e81916914f3baedcb022020-09-01T00:00:00Zhttps://doi.org/10.1038/s41467-020-18695-zhttps://doaj.org/toc/2041-1723The ecological niche of a given microbe is difficult to define, but can be approximated from the range of biochemical reactions encoded by its genome. Here the authors use these genomic data and analyze them using manifold learning, which generates a diffusion map of the metabolic niche space of over 2500 bacteria.Ashkaan K. FahimipourThilo GrossNature PortfolioarticleScienceQENNature Communications, Vol 11, Iss 1, Pp 1-8 (2020)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Ashkaan K. Fahimipour Thilo Gross Mapping the bacterial metabolic niche space
description	The ecological niche of a given microbe is difficult to define, but can be approximated from the range of biochemical reactions encoded by its genome. Here the authors use these genomic data and analyze them using manifold learning, which generates a diffusion map of the metabolic niche space of over 2500 bacteria.
format	article
author	Ashkaan K. Fahimipour Thilo Gross
author_facet	Ashkaan K. Fahimipour Thilo Gross
author_sort	Ashkaan K. Fahimipour
title	Mapping the bacterial metabolic niche space
title_short	Mapping the bacterial metabolic niche space
title_full	Mapping the bacterial metabolic niche space
title_fullStr	Mapping the bacterial metabolic niche space
title_full_unstemmed	Mapping the bacterial metabolic niche space
title_sort	mapping the bacterial metabolic niche space
publisher	Nature Portfolio
publishDate	2020
url	https://doaj.org/article/3eda249414684e81916914f3baedcb02
work_keys_str_mv	AT ashkaankfahimipour mappingthebacterialmetabolicnichespace AT thilogross mappingthebacterialmetabolicnichespace
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Mapping the bacterial metabolic niche space

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