Bicolor angelfish (Centropyge bicolor) provides the first chromosome-level genome of the Pomacanthidae family

The Bicolor Angelfish, Centropyge bicolor, is a tropical coral reef fish. It is named for its striking two-color body. However, a lack of high-quality genomic data means little is known about the genome of this species. Here, we present a chromosome-level C. bicolor genome constructed u...

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Autores principales:	Chunhua Li, Xianwei Yang, Libin Shao, Rui Zhang, Qun Liu, Mengqi Zhang, Shanshan Liu, Shanshan Pan, Weizhen Xue, Congyan Wang, Chunyan Mao, He Zhang, Guangyi Fan
Formato:	article
Lenguaje:	EN
Publicado:	GigaScience Press 2021
Materias:	Electronic computers. Computer science QA75.5-76.95
Acceso en línea:	https://doaj.org/article/4307658153894e13a0b136f5acfb480e
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spelling	oai:doaj.org-article:4307658153894e13a0b136f5acfb480e2021-11-09T10:26:03ZBicolor angelfish (Centropyge bicolor) provides the first chromosome-level genome of the Pomacanthidae family10.46471/gigabyte.322709-4715https://doaj.org/article/4307658153894e13a0b136f5acfb480e2021-11-01T00:00:00Zhttps://gigabytejournal.com/articles/32https://doaj.org/toc/2709-4715 The Bicolor Angelfish, Centropyge bicolor, is a tropical coral reef fish. It is named for its striking two-color body. However, a lack of high-quality genomic data means little is known about the genome of this species. Here, we present a chromosome-level C. bicolor genome constructed using Hi-C data. The assembled genome is 650 Mbp in size, with a scaffold N50 value of 4.4 Mbp, and a contig N50 value of 114 Kbp. Protein-coding genes numbering 21,774 were annotated. Our analysis will help others to choose the most appropriate de novo genome sequencing strategy based on resources and target applications. To the best of our knowledge, this is the first chromosome-level genome for the Pomacanthidae family, which might contribute to further studies exploring coral reef fish evolution, diversity and conservation. Chunhua LiXianwei YangLibin ShaoRui ZhangQun LiuMengqi ZhangShanshan LiuShanshan PanWeizhen XueCongyan WangChunyan MaoHe ZhangGuangyi FanGigaScience PressarticleElectronic computers. Computer scienceQA75.5-76.95ENGigaByte (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Electronic computers. Computer science QA75.5-76.95
spellingShingle	Electronic computers. Computer science QA75.5-76.95 Chunhua Li Xianwei Yang Libin Shao Rui Zhang Qun Liu Mengqi Zhang Shanshan Liu Shanshan Pan Weizhen Xue Congyan Wang Chunyan Mao He Zhang Guangyi Fan Bicolor angelfish (Centropyge bicolor) provides the first chromosome-level genome of the Pomacanthidae family
description	The Bicolor Angelfish, Centropyge bicolor, is a tropical coral reef fish. It is named for its striking two-color body. However, a lack of high-quality genomic data means little is known about the genome of this species. Here, we present a chromosome-level C. bicolor genome constructed using Hi-C data. The assembled genome is 650 Mbp in size, with a scaffold N50 value of 4.4 Mbp, and a contig N50 value of 114 Kbp. Protein-coding genes numbering 21,774 were annotated. Our analysis will help others to choose the most appropriate de novo genome sequencing strategy based on resources and target applications. To the best of our knowledge, this is the first chromosome-level genome for the Pomacanthidae family, which might contribute to further studies exploring coral reef fish evolution, diversity and conservation.
format	article
author	Chunhua Li Xianwei Yang Libin Shao Rui Zhang Qun Liu Mengqi Zhang Shanshan Liu Shanshan Pan Weizhen Xue Congyan Wang Chunyan Mao He Zhang Guangyi Fan
author_facet	Chunhua Li Xianwei Yang Libin Shao Rui Zhang Qun Liu Mengqi Zhang Shanshan Liu Shanshan Pan Weizhen Xue Congyan Wang Chunyan Mao He Zhang Guangyi Fan
author_sort	Chunhua Li
title	Bicolor angelfish (Centropyge bicolor) provides the first chromosome-level genome of the Pomacanthidae family
title_short	Bicolor angelfish (Centropyge bicolor) provides the first chromosome-level genome of the Pomacanthidae family
title_full	Bicolor angelfish (Centropyge bicolor) provides the first chromosome-level genome of the Pomacanthidae family
title_fullStr	Bicolor angelfish (Centropyge bicolor) provides the first chromosome-level genome of the Pomacanthidae family
title_full_unstemmed	Bicolor angelfish (Centropyge bicolor) provides the first chromosome-level genome of the Pomacanthidae family
title_sort	bicolor angelfish (centropyge bicolor) provides the first chromosome-level genome of the pomacanthidae family
publisher	GigaScience Press
publishDate	2021
url	https://doaj.org/article/4307658153894e13a0b136f5acfb480e
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Bicolor angelfish (Centropyge bicolor) provides the first chromosome-level genome of the Pomacanthidae family

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