Response of soil microbiome structure and its network profiles to four soil amendments in monocropping strawberry greenhouse.

With the constant surge of strawberry cultivation and human demand, widespread concern has been expressed about the severe soil and plant health problems caused by continuous strawberry cropping, particularly monocropping in greenhouses. Effective microorganisms (EM) and Bacillus subtilis (BS) have...

Descripción completa

Guardado en:

Detalles Bibliográficos
Autores principales:	Senlin Liu, Muzammil Hassan Khan, Zhongyuan Yuan, Sarfraz Hussain, Hui Cao, Yabo Liu
Formato:	article
Lenguaje:	EN
Publicado:	Public Library of Science (PLoS) 2021
Materias:	Medicine R Science Q
Acceso en línea:	https://doaj.org/article/4853f789e6ca4c4b91823c7b7c122a4c
Etiquetas:	Agregar Etiqueta Sin Etiquetas, Sea el primero en etiquetar este registro!

id	oai:doaj.org-article:4853f789e6ca4c4b91823c7b7c122a4c
record_format	dspace
spelling	oai:doaj.org-article:4853f789e6ca4c4b91823c7b7c122a4c2021-12-02T20:06:07ZResponse of soil microbiome structure and its network profiles to four soil amendments in monocropping strawberry greenhouse.1932-620310.1371/journal.pone.0245180https://doaj.org/article/4853f789e6ca4c4b91823c7b7c122a4c2021-01-01T00:00:00Zhttps://doi.org/10.1371/journal.pone.0245180https://doaj.org/toc/1932-6203With the constant surge of strawberry cultivation and human demand, widespread concern has been expressed about the severe soil and plant health problems caused by continuous strawberry cropping, particularly monocropping in greenhouses. Effective microorganisms (EM) and Bacillus subtilis (BS) have been extensively commercialized as biological control agents (BCAs) to promote plant growth and yield enhancement. However, their effects on soil microbes are obscure. To regulate the microbial community in continuous cropping strawberry soils, we developed four soil amendments based on these two BCAs by adding low and high contents of compost. The amplicon sequencing of bacterial and fungal ribosomal markers was applied to study the response of the soil microbiome structure. We noticed a sharp increase in bacterial diversity after adding EM-treated high compost and BS-treated low compost, while there was no significant change in fungal diversity among treatments. Through taxonomic classification and FUNGuild analysis, we found that the application of soil amendments resulted in a significant decline in the relative abundance of fungal plant pathogens (Rhizopus, Penicillium and Fusarium) in the soils; accordingly, the metabolic functions of a range of detrimental fungi were inhibited. Correlation analysis indicated that soil microbial community was indirectly driven by soil physicochemical properties. Co-occurrence networks revealed that soil amendments contributed to the connectivity of bacterial network, and EM-treated with high compost was the most complex and balanced. Collectively, EM-treated high compost and BS-treated low compost can well regulate the microbial community structure and thus maintain soil health.Senlin LiuMuzammil Hassan KhanZhongyuan YuanSarfraz HussainHui CaoYabo LiuPublic Library of Science (PLoS)articleMedicineRScienceQENPLoS ONE, Vol 16, Iss 9, p e0245180 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Medicine R Science Q
spellingShingle	Medicine R Science Q Senlin Liu Muzammil Hassan Khan Zhongyuan Yuan Sarfraz Hussain Hui Cao Yabo Liu Response of soil microbiome structure and its network profiles to four soil amendments in monocropping strawberry greenhouse.
description	With the constant surge of strawberry cultivation and human demand, widespread concern has been expressed about the severe soil and plant health problems caused by continuous strawberry cropping, particularly monocropping in greenhouses. Effective microorganisms (EM) and Bacillus subtilis (BS) have been extensively commercialized as biological control agents (BCAs) to promote plant growth and yield enhancement. However, their effects on soil microbes are obscure. To regulate the microbial community in continuous cropping strawberry soils, we developed four soil amendments based on these two BCAs by adding low and high contents of compost. The amplicon sequencing of bacterial and fungal ribosomal markers was applied to study the response of the soil microbiome structure. We noticed a sharp increase in bacterial diversity after adding EM-treated high compost and BS-treated low compost, while there was no significant change in fungal diversity among treatments. Through taxonomic classification and FUNGuild analysis, we found that the application of soil amendments resulted in a significant decline in the relative abundance of fungal plant pathogens (Rhizopus, Penicillium and Fusarium) in the soils; accordingly, the metabolic functions of a range of detrimental fungi were inhibited. Correlation analysis indicated that soil microbial community was indirectly driven by soil physicochemical properties. Co-occurrence networks revealed that soil amendments contributed to the connectivity of bacterial network, and EM-treated with high compost was the most complex and balanced. Collectively, EM-treated high compost and BS-treated low compost can well regulate the microbial community structure and thus maintain soil health.
format	article
author	Senlin Liu Muzammil Hassan Khan Zhongyuan Yuan Sarfraz Hussain Hui Cao Yabo Liu
author_facet	Senlin Liu Muzammil Hassan Khan Zhongyuan Yuan Sarfraz Hussain Hui Cao Yabo Liu
author_sort	Senlin Liu
title	Response of soil microbiome structure and its network profiles to four soil amendments in monocropping strawberry greenhouse.
title_short	Response of soil microbiome structure and its network profiles to four soil amendments in monocropping strawberry greenhouse.
title_full	Response of soil microbiome structure and its network profiles to four soil amendments in monocropping strawberry greenhouse.
title_fullStr	Response of soil microbiome structure and its network profiles to four soil amendments in monocropping strawberry greenhouse.
title_full_unstemmed	Response of soil microbiome structure and its network profiles to four soil amendments in monocropping strawberry greenhouse.
title_sort	response of soil microbiome structure and its network profiles to four soil amendments in monocropping strawberry greenhouse.
publisher	Public Library of Science (PLoS)
publishDate	2021
url	https://doaj.org/article/4853f789e6ca4c4b91823c7b7c122a4c
work_keys_str_mv	AT senlinliu responseofsoilmicrobiomestructureanditsnetworkprofilestofoursoilamendmentsinmonocroppingstrawberrygreenhouse AT muzammilhassankhan responseofsoilmicrobiomestructureanditsnetworkprofilestofoursoilamendmentsinmonocroppingstrawberrygreenhouse AT zhongyuanyuan responseofsoilmicrobiomestructureanditsnetworkprofilestofoursoilamendmentsinmonocroppingstrawberrygreenhouse AT sarfrazhussain responseofsoilmicrobiomestructureanditsnetworkprofilestofoursoilamendmentsinmonocroppingstrawberrygreenhouse AT huicao responseofsoilmicrobiomestructureanditsnetworkprofilestofoursoilamendmentsinmonocroppingstrawberrygreenhouse AT yaboliu responseofsoilmicrobiomestructureanditsnetworkprofilestofoursoilamendmentsinmonocroppingstrawberrygreenhouse
_version_	1718375422110990336

Response of soil microbiome structure and its network profiles to four soil amendments in monocropping strawberry greenhouse.

Ejemplares similares