Short Communication: Identification and phylogenetic analysis of Corynebacterium diphtheriae isolates from Jakarta, Indonesia based on partial rpoB gene

Abstract. Yasmon A, Rosana Y, Usman D, Prilandari LI, Hartono TS. 2020. Short Communication: Identification and phylogenetic analysis of Corynebacterium diphtheriae isolates from Jakarta, Indonesia based on partial rpoB gene. Biodiversitas 21: 3070-3075. Indonesia is a developing country with the gr...

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Autores principales:	Andi Yasmon, YEVA ROSANA, DONI USMAN, LUH INTA PRILANDARI, TEGUH SARRY HARTONO
Formato:	article
Lenguaje:	EN
Publicado:	MBI & UNS Solo 2020
Materias:	corynebacterium diphtheriae, rpob, phylogenetic tree, indonesian strains Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/49c5fc97b1964d5db6a06f5ea9f2a3e2
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spelling	oai:doaj.org-article:49c5fc97b1964d5db6a06f5ea9f2a3e22021-11-22T00:40:52ZShort Communication: Identification and phylogenetic analysis of Corynebacterium diphtheriae isolates from Jakarta, Indonesia based on partial rpoB gene1412-033X2085-472210.13057/biodiv/d210726https://doaj.org/article/49c5fc97b1964d5db6a06f5ea9f2a3e22020-06-01T00:00:00Zhttps://smujo.id/biodiv/article/view/5165https://doaj.org/toc/1412-033Xhttps://doaj.org/toc/2085-4722Abstract. Yasmon A, Rosana Y, Usman D, Prilandari LI, Hartono TS. 2020. Short Communication: Identification and phylogenetic analysis of Corynebacterium diphtheriae isolates from Jakarta, Indonesia based on partial rpoB gene. Biodiversitas 21: 3070-3075. Indonesia is a developing country with the greatest potential of diphtheria, so accurate identification is needed to detect C. diphtheriae. The genetic relationship analysis is important to be determined so that this transmittable disease can be prevented. In this study, we reported the identification and phylogenetic analysis of C. diphtheriae based on partial rpoB gene. Twelve samples from throat swabs of diphtheria suspected patients from 2018 to 2019 were used in this study. The result of VITEK 2 ANC-Automated Testing identified that all isolates were C. diphtheriae. However, the identification based on partial rpoB gene analysis showed that only 10 out of 12 isolates were C. diphtheriae, while 2 other isolates were C. argentoratense. Of 10 C. diphtheriae strains/isolates, 2 strains were unique for Indonesia. Thus, it is needed to evaluate the accuracy of VITEK 2 ANC-Automated Testing and to conduct further comprehensive studies on the genetic relationships of C. diphtheriae strains based on multiple virulence genes, multilocus sequence typing and/or whole-genome analysis.Andi YasmonYEVA ROSANADONI USMANLUH INTA PRILANDARITEGUH SARRY HARTONOMBI & UNS Soloarticlecorynebacterium diphtheriae, rpob, phylogenetic tree, indonesian strainsBiology (General)QH301-705.5ENBiodiversitas, Vol 21, Iss 7 (2020)
institution	DOAJ
collection	DOAJ
language	EN
topic	corynebacterium diphtheriae, rpob, phylogenetic tree, indonesian strains Biology (General) QH301-705.5
spellingShingle	corynebacterium diphtheriae, rpob, phylogenetic tree, indonesian strains Biology (General) QH301-705.5 Andi Yasmon YEVA ROSANA DONI USMAN LUH INTA PRILANDARI TEGUH SARRY HARTONO Short Communication: Identification and phylogenetic analysis of Corynebacterium diphtheriae isolates from Jakarta, Indonesia based on partial rpoB gene
description	Abstract. Yasmon A, Rosana Y, Usman D, Prilandari LI, Hartono TS. 2020. Short Communication: Identification and phylogenetic analysis of Corynebacterium diphtheriae isolates from Jakarta, Indonesia based on partial rpoB gene. Biodiversitas 21: 3070-3075. Indonesia is a developing country with the greatest potential of diphtheria, so accurate identification is needed to detect C. diphtheriae. The genetic relationship analysis is important to be determined so that this transmittable disease can be prevented. In this study, we reported the identification and phylogenetic analysis of C. diphtheriae based on partial rpoB gene. Twelve samples from throat swabs of diphtheria suspected patients from 2018 to 2019 were used in this study. The result of VITEK 2 ANC-Automated Testing identified that all isolates were C. diphtheriae. However, the identification based on partial rpoB gene analysis showed that only 10 out of 12 isolates were C. diphtheriae, while 2 other isolates were C. argentoratense. Of 10 C. diphtheriae strains/isolates, 2 strains were unique for Indonesia. Thus, it is needed to evaluate the accuracy of VITEK 2 ANC-Automated Testing and to conduct further comprehensive studies on the genetic relationships of C. diphtheriae strains based on multiple virulence genes, multilocus sequence typing and/or whole-genome analysis.
format	article
author	Andi Yasmon YEVA ROSANA DONI USMAN LUH INTA PRILANDARI TEGUH SARRY HARTONO
author_facet	Andi Yasmon YEVA ROSANA DONI USMAN LUH INTA PRILANDARI TEGUH SARRY HARTONO
author_sort	Andi Yasmon
title	Short Communication: Identification and phylogenetic analysis of Corynebacterium diphtheriae isolates from Jakarta, Indonesia based on partial rpoB gene
title_short	Short Communication: Identification and phylogenetic analysis of Corynebacterium diphtheriae isolates from Jakarta, Indonesia based on partial rpoB gene
title_full	Short Communication: Identification and phylogenetic analysis of Corynebacterium diphtheriae isolates from Jakarta, Indonesia based on partial rpoB gene
title_fullStr	Short Communication: Identification and phylogenetic analysis of Corynebacterium diphtheriae isolates from Jakarta, Indonesia based on partial rpoB gene
title_full_unstemmed	Short Communication: Identification and phylogenetic analysis of Corynebacterium diphtheriae isolates from Jakarta, Indonesia based on partial rpoB gene
title_sort	short communication: identification and phylogenetic analysis of corynebacterium diphtheriae isolates from jakarta, indonesia based on partial rpob gene
publisher	MBI & UNS Solo
publishDate	2020
url	https://doaj.org/article/49c5fc97b1964d5db6a06f5ea9f2a3e2
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Short Communication: Identification and phylogenetic analysis of Corynebacterium diphtheriae isolates from Jakarta, Indonesia based on partial rpoB gene

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