Artificial Seawater Media Facilitate Cultivating Members of the Microbial Majority from the Gulf of Mexico

ABSTRACT High-throughput cultivation studies have been successful at bringing numerous important marine bacterioplankton lineages into culture, yet these frequently utilize natural seawater media that can hamper portability, reproducibility, and downstream characterization efforts. Here we report th...

Descripción completa

Guardado en:
Detalles Bibliográficos
Autores principales: Michael W. Henson, David M. Pitre, Jessica Lee Weckhorst, V. Celeste Lanclos, Austen T. Webber, J. Cameron Thrash
Formato: article
Lenguaje:EN
Publicado: American Society for Microbiology 2016
Materias:
Acceso en línea:https://doaj.org/article/4e145527e60047c3bdb3b191f5a8ed73
Etiquetas: Agregar Etiqueta
Sin Etiquetas, Sea el primero en etiquetar este registro!
id oai:doaj.org-article:4e145527e60047c3bdb3b191f5a8ed73
record_format dspace
spelling oai:doaj.org-article:4e145527e60047c3bdb3b191f5a8ed732021-11-15T15:21:22ZArtificial Seawater Media Facilitate Cultivating Members of the Microbial Majority from the Gulf of Mexico10.1128/mSphere.00028-162379-5042https://doaj.org/article/4e145527e60047c3bdb3b191f5a8ed732016-04-01T00:00:00Zhttps://journals.asm.org/doi/10.1128/mSphere.00028-16https://doaj.org/toc/2379-5042ABSTRACT High-throughput cultivation studies have been successful at bringing numerous important marine bacterioplankton lineages into culture, yet these frequently utilize natural seawater media that can hamper portability, reproducibility, and downstream characterization efforts. Here we report the results of seven experiments with a set of newly developed artificial seawater media and evaluation of cultivation success via comparison with community sequencing data from the inocula. Eighty-two new isolates represent highly important marine clades, including SAR116, OM60/NOR5, SAR92, Roseobacter, and SAR11. For many, isolation with an artificial seawater medium is unprecedented, and several organisms are also the first of their type from the Gulf of Mexico. Community analysis revealed that many isolates were among the 20 most abundant organisms in their source inoculum. This method will expand the accessibility of bacterioplankton cultivation experiments and improve repeatability by avoiding normal compositional changes in natural seawater. IMPORTANCE The difficulty in cultivating many microbial taxa vexes researchers intent on understanding the contributions of these organisms to natural systems, particularly when these organisms are numerically abundant, and many cultivation attempts recover only rare taxa. Efforts to improve this conundrum with marine bacterioplankton have been successful with natural seawater media, but that approach suffers from a number of drawbacks and there have been no comparable artificial alternatives created in the laboratory. This work demonstrates that a newly developed suite of artificial-seawater media can successfully cultivate many of the most abundant taxa from seawater samples and many taxa previously only cultivated with natural-seawater media. This methodology therefore significantly simplifies efforts to cultivate bacterioplankton and greatly improves our ability to perform physiological characterization of cultures postisolation.Michael W. HensonDavid M. PitreJessica Lee WeckhorstV. Celeste LanclosAusten T. WebberJ. Cameron ThrashAmerican Society for MicrobiologyarticleGulf of MexicoSAR11artificial seawatercoastal microbiologyhigh-throughput culturingmarine microbiologyMicrobiologyQR1-502ENmSphere, Vol 1, Iss 2 (2016)
institution DOAJ
collection DOAJ
language EN
topic Gulf of Mexico
SAR11
artificial seawater
coastal microbiology
high-throughput culturing
marine microbiology
Microbiology
QR1-502
spellingShingle Gulf of Mexico
SAR11
artificial seawater
coastal microbiology
high-throughput culturing
marine microbiology
Microbiology
QR1-502
Michael W. Henson
David M. Pitre
Jessica Lee Weckhorst
V. Celeste Lanclos
Austen T. Webber
J. Cameron Thrash
Artificial Seawater Media Facilitate Cultivating Members of the Microbial Majority from the Gulf of Mexico
description ABSTRACT High-throughput cultivation studies have been successful at bringing numerous important marine bacterioplankton lineages into culture, yet these frequently utilize natural seawater media that can hamper portability, reproducibility, and downstream characterization efforts. Here we report the results of seven experiments with a set of newly developed artificial seawater media and evaluation of cultivation success via comparison with community sequencing data from the inocula. Eighty-two new isolates represent highly important marine clades, including SAR116, OM60/NOR5, SAR92, Roseobacter, and SAR11. For many, isolation with an artificial seawater medium is unprecedented, and several organisms are also the first of their type from the Gulf of Mexico. Community analysis revealed that many isolates were among the 20 most abundant organisms in their source inoculum. This method will expand the accessibility of bacterioplankton cultivation experiments and improve repeatability by avoiding normal compositional changes in natural seawater. IMPORTANCE The difficulty in cultivating many microbial taxa vexes researchers intent on understanding the contributions of these organisms to natural systems, particularly when these organisms are numerically abundant, and many cultivation attempts recover only rare taxa. Efforts to improve this conundrum with marine bacterioplankton have been successful with natural seawater media, but that approach suffers from a number of drawbacks and there have been no comparable artificial alternatives created in the laboratory. This work demonstrates that a newly developed suite of artificial-seawater media can successfully cultivate many of the most abundant taxa from seawater samples and many taxa previously only cultivated with natural-seawater media. This methodology therefore significantly simplifies efforts to cultivate bacterioplankton and greatly improves our ability to perform physiological characterization of cultures postisolation.
format article
author Michael W. Henson
David M. Pitre
Jessica Lee Weckhorst
V. Celeste Lanclos
Austen T. Webber
J. Cameron Thrash
author_facet Michael W. Henson
David M. Pitre
Jessica Lee Weckhorst
V. Celeste Lanclos
Austen T. Webber
J. Cameron Thrash
author_sort Michael W. Henson
title Artificial Seawater Media Facilitate Cultivating Members of the Microbial Majority from the Gulf of Mexico
title_short Artificial Seawater Media Facilitate Cultivating Members of the Microbial Majority from the Gulf of Mexico
title_full Artificial Seawater Media Facilitate Cultivating Members of the Microbial Majority from the Gulf of Mexico
title_fullStr Artificial Seawater Media Facilitate Cultivating Members of the Microbial Majority from the Gulf of Mexico
title_full_unstemmed Artificial Seawater Media Facilitate Cultivating Members of the Microbial Majority from the Gulf of Mexico
title_sort artificial seawater media facilitate cultivating members of the microbial majority from the gulf of mexico
publisher American Society for Microbiology
publishDate 2016
url https://doaj.org/article/4e145527e60047c3bdb3b191f5a8ed73
work_keys_str_mv AT michaelwhenson artificialseawatermediafacilitatecultivatingmembersofthemicrobialmajorityfromthegulfofmexico
AT davidmpitre artificialseawatermediafacilitatecultivatingmembersofthemicrobialmajorityfromthegulfofmexico
AT jessicaleeweckhorst artificialseawatermediafacilitatecultivatingmembersofthemicrobialmajorityfromthegulfofmexico
AT vcelestelanclos artificialseawatermediafacilitatecultivatingmembersofthemicrobialmajorityfromthegulfofmexico
AT austentwebber artificialseawatermediafacilitatecultivatingmembersofthemicrobialmajorityfromthegulfofmexico
AT jcameronthrash artificialseawatermediafacilitatecultivatingmembersofthemicrobialmajorityfromthegulfofmexico
_version_ 1718428126169530368