OptiClust, an Improved Method for Assigning Amplicon-Based Sequence Data to Operational Taxonomic Units
ABSTRACT Assignment of 16S rRNA gene sequences to operational taxonomic units (OTUs) is a computational bottleneck in the process of analyzing microbial communities. Although this has been an active area of research, it has been difficult to overcome the time and memory demands while improving the q...
Saved in:
Main Authors: | Sarah L. Westcott, Patrick D. Schloss |
---|---|
Format: | article |
Language: | EN |
Published: |
American Society for Microbiology
2017
|
Subjects: | |
Online Access: | https://doaj.org/article/4e82c537decc40d890eac4e2fbeafad9 |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
-
Application of a Database-Independent Approach To Assess the Quality of Operational Taxonomic Unit Picking Methods
by: Patrick D. Schloss
Published: (2016) -
The Impact of DNA Polymerase and Number of Rounds of Amplification in PCR on 16S rRNA Gene Sequence Data
by: Marc A. Sze, et al.
Published: (2019) -
The Initial Gut Microbiota and Response to Antibiotic Perturbation Influence <named-content content-type="genus-species">Clostridioides difficile</named-content> Clearance in Mice
by: Sarah Tomkovich, et al.
Published: (2020) -
A Framework for Effective Application of Machine Learning to Microbiome-Based Classification Problems
by: Begüm D. Topçuoğlu, et al.
Published: (2020) -
Rabbit microbiota across the whole body revealed by 16S rRNA gene amplicon sequencing
by: Xiaofen Hu, et al.
Published: (2021)