Identifying transposable element expression dynamics and heterogeneity during development at the single-cell level with a processing pipeline scTE

How transposable elements (TE) contribute to cell fate changes is unclear. Here, the authors generate a pipeline to quantify TE expression from single cell data. They show the dynamic expression of TEs from gastrulation to somatic cell reprogramming and human disease

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Autores principales:	Jiangping He, Isaac A. Babarinde, Li Sun, Shuyang Xu, Ruhai Chen, Junjie Shi, Yuanjie Wei, Yuhao Li, Gang Ma, Qiang Zhuang, Andrew P. Hutchins, Jiekai Chen
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2021
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/4ed9c74b80c94fd98b07d31c04585b6c
Etiquetas:	Agregar Etiqueta Sin Etiquetas, Sea el primero en etiquetar este registro!

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spelling	oai:doaj.org-article:4ed9c74b80c94fd98b07d31c04585b6c2021-12-02T13:34:48ZIdentifying transposable element expression dynamics and heterogeneity during development at the single-cell level with a processing pipeline scTE10.1038/s41467-021-21808-x2041-1723https://doaj.org/article/4ed9c74b80c94fd98b07d31c04585b6c2021-03-01T00:00:00Zhttps://doi.org/10.1038/s41467-021-21808-xhttps://doaj.org/toc/2041-1723How transposable elements (TE) contribute to cell fate changes is unclear. Here, the authors generate a pipeline to quantify TE expression from single cell data. They show the dynamic expression of TEs from gastrulation to somatic cell reprogramming and human diseaseJiangping HeIsaac A. BabarindeLi SunShuyang XuRuhai ChenJunjie ShiYuanjie WeiYuhao LiGang MaQiang ZhuangAndrew P. HutchinsJiekai ChenNature PortfolioarticleScienceQENNature Communications, Vol 12, Iss 1, Pp 1-14 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Jiangping He Isaac A. Babarinde Li Sun Shuyang Xu Ruhai Chen Junjie Shi Yuanjie Wei Yuhao Li Gang Ma Qiang Zhuang Andrew P. Hutchins Jiekai Chen Identifying transposable element expression dynamics and heterogeneity during development at the single-cell level with a processing pipeline scTE
description	How transposable elements (TE) contribute to cell fate changes is unclear. Here, the authors generate a pipeline to quantify TE expression from single cell data. They show the dynamic expression of TEs from gastrulation to somatic cell reprogramming and human disease
format	article
author	Jiangping He Isaac A. Babarinde Li Sun Shuyang Xu Ruhai Chen Junjie Shi Yuanjie Wei Yuhao Li Gang Ma Qiang Zhuang Andrew P. Hutchins Jiekai Chen
author_facet	Jiangping He Isaac A. Babarinde Li Sun Shuyang Xu Ruhai Chen Junjie Shi Yuanjie Wei Yuhao Li Gang Ma Qiang Zhuang Andrew P. Hutchins Jiekai Chen
author_sort	Jiangping He
title	Identifying transposable element expression dynamics and heterogeneity during development at the single-cell level with a processing pipeline scTE
title_short	Identifying transposable element expression dynamics and heterogeneity during development at the single-cell level with a processing pipeline scTE
title_full	Identifying transposable element expression dynamics and heterogeneity during development at the single-cell level with a processing pipeline scTE
title_fullStr	Identifying transposable element expression dynamics and heterogeneity during development at the single-cell level with a processing pipeline scTE
title_full_unstemmed	Identifying transposable element expression dynamics and heterogeneity during development at the single-cell level with a processing pipeline scTE
title_sort	identifying transposable element expression dynamics and heterogeneity during development at the single-cell level with a processing pipeline scte
publisher	Nature Portfolio
publishDate	2021
url	https://doaj.org/article/4ed9c74b80c94fd98b07d31c04585b6c
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Identifying transposable element expression dynamics and heterogeneity during development at the single-cell level with a processing pipeline scTE

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