Different rearing conditions alter gut microbiota composition and host physiology in Shaoxing ducks

Abstract Emerging evidences have linked the gut microbiota to poultry physiology. Gut microbiota composition in Shaoxing ducks were profiled under different rearing conditions: raised on the litter floor and the plastic mesh floor. A total of 46 and 39 luminal content samples from the duodenum, ileu...

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Autores principales:	Shumei Wang, Li Chen, Maozhang He, Junda Shen, Guoqin Li, Zhengrong Tao, Rurong Wu, Lizhi Lu
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2018
Materias:	Medicine R Science Q
Acceso en línea:	https://doaj.org/article/4f7c664dc9ab4b48b728f0d76fc86b04
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spelling	oai:doaj.org-article:4f7c664dc9ab4b48b728f0d76fc86b042021-12-02T12:32:10ZDifferent rearing conditions alter gut microbiota composition and host physiology in Shaoxing ducks10.1038/s41598-018-25760-72045-2322https://doaj.org/article/4f7c664dc9ab4b48b728f0d76fc86b042018-05-01T00:00:00Zhttps://doi.org/10.1038/s41598-018-25760-7https://doaj.org/toc/2045-2322Abstract Emerging evidences have linked the gut microbiota to poultry physiology. Gut microbiota composition in Shaoxing ducks were profiled under different rearing conditions: raised on the litter floor and the plastic mesh floor. A total of 46 and 39 luminal content samples from the duodenum, ileum, and cecum of the ducks reared under the two conditions were analyzed by 16S rRNA gene amplicon sequencing analysis. Proteobacteria (48.66%), Proteobacteria (33.38%), and Bacteroidetes (55.35%) were the dominant phyla in the duodenum, ileum, and cecum of the ducks reared on the litter floor respectively, while Firmicutes (30.80%), Firmicutes (66.62%) and Bacteroidetes (47.15%) were the topmost phyla in the duodenum, ileum, and cecum of the ducks reared on the plastic mesh floor. Physiologically, the height of villi and the ratio of villus height to crypt depth in the ileum and duodenum were significantly greater in the ducks reared on plastic mesh floor. Furthermore, our results demonstrate that the gut microbiota was significantly associated with the duck phenotypes, such as chest depth and serum estradiol levels (p < 0.05), which were altered by the different rearing conditions. Collectively, our results showed that the rearing floor types have an important effect on the gastrointestinal microbial composition of ducks.Shumei WangLi ChenMaozhang HeJunda ShenGuoqin LiZhengrong TaoRurong WuLizhi LuNature PortfolioarticleMedicineRScienceQENScientific Reports, Vol 8, Iss 1, Pp 1-13 (2018)
institution	DOAJ
collection	DOAJ
language	EN
topic	Medicine R Science Q
spellingShingle	Medicine R Science Q Shumei Wang Li Chen Maozhang He Junda Shen Guoqin Li Zhengrong Tao Rurong Wu Lizhi Lu Different rearing conditions alter gut microbiota composition and host physiology in Shaoxing ducks
description	Abstract Emerging evidences have linked the gut microbiota to poultry physiology. Gut microbiota composition in Shaoxing ducks were profiled under different rearing conditions: raised on the litter floor and the plastic mesh floor. A total of 46 and 39 luminal content samples from the duodenum, ileum, and cecum of the ducks reared under the two conditions were analyzed by 16S rRNA gene amplicon sequencing analysis. Proteobacteria (48.66%), Proteobacteria (33.38%), and Bacteroidetes (55.35%) were the dominant phyla in the duodenum, ileum, and cecum of the ducks reared on the litter floor respectively, while Firmicutes (30.80%), Firmicutes (66.62%) and Bacteroidetes (47.15%) were the topmost phyla in the duodenum, ileum, and cecum of the ducks reared on the plastic mesh floor. Physiologically, the height of villi and the ratio of villus height to crypt depth in the ileum and duodenum were significantly greater in the ducks reared on plastic mesh floor. Furthermore, our results demonstrate that the gut microbiota was significantly associated with the duck phenotypes, such as chest depth and serum estradiol levels (p < 0.05), which were altered by the different rearing conditions. Collectively, our results showed that the rearing floor types have an important effect on the gastrointestinal microbial composition of ducks.
format	article
author	Shumei Wang Li Chen Maozhang He Junda Shen Guoqin Li Zhengrong Tao Rurong Wu Lizhi Lu
author_facet	Shumei Wang Li Chen Maozhang He Junda Shen Guoqin Li Zhengrong Tao Rurong Wu Lizhi Lu
author_sort	Shumei Wang
title	Different rearing conditions alter gut microbiota composition and host physiology in Shaoxing ducks
title_short	Different rearing conditions alter gut microbiota composition and host physiology in Shaoxing ducks
title_full	Different rearing conditions alter gut microbiota composition and host physiology in Shaoxing ducks
title_fullStr	Different rearing conditions alter gut microbiota composition and host physiology in Shaoxing ducks
title_full_unstemmed	Different rearing conditions alter gut microbiota composition and host physiology in Shaoxing ducks
title_sort	different rearing conditions alter gut microbiota composition and host physiology in shaoxing ducks
publisher	Nature Portfolio
publishDate	2018
url	https://doaj.org/article/4f7c664dc9ab4b48b728f0d76fc86b04
work_keys_str_mv	AT shumeiwang differentrearingconditionsaltergutmicrobiotacompositionandhostphysiologyinshaoxingducks AT lichen differentrearingconditionsaltergutmicrobiotacompositionandhostphysiologyinshaoxingducks AT maozhanghe differentrearingconditionsaltergutmicrobiotacompositionandhostphysiologyinshaoxingducks AT jundashen differentrearingconditionsaltergutmicrobiotacompositionandhostphysiologyinshaoxingducks AT guoqinli differentrearingconditionsaltergutmicrobiotacompositionandhostphysiologyinshaoxingducks AT zhengrongtao differentrearingconditionsaltergutmicrobiotacompositionandhostphysiologyinshaoxingducks AT rurongwu differentrearingconditionsaltergutmicrobiotacompositionandhostphysiologyinshaoxingducks AT lizhilu differentrearingconditionsaltergutmicrobiotacompositionandhostphysiologyinshaoxingducks
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Different rearing conditions alter gut microbiota composition and host physiology in Shaoxing ducks

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