Comparative Genomics of <italic toggle="yes">Bacillus thuringiensis</italic> Reveals a Path to Specialized Exploitation of Multiple Invertebrate Hosts

ABSTRACT Understanding the genetic basis of host shifts is a key genomic question for pathogen and parasite biology. The Bacillus cereus group, which encompasses Bacillus thuringiensis and Bacillus anthracis, contains pathogens that can infect insects, nematodes, and vertebrates. Since the target ra...

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Autores principales: Jinshui Zheng, Qiuling Gao, Linlin Liu, Hualin Liu, Yueying Wang, Donghai Peng, Lifang Ruan, Ben Raymond, Ming Sun
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Publicado: American Society for Microbiology 2017
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spelling oai:doaj.org-article:511eaa59d05049b7a3cb5590c00785272021-11-15T15:51:43ZComparative Genomics of <italic toggle="yes">Bacillus thuringiensis</italic> Reveals a Path to Specialized Exploitation of Multiple Invertebrate Hosts10.1128/mBio.00822-172150-7511https://doaj.org/article/511eaa59d05049b7a3cb5590c00785272017-09-01T00:00:00Zhttps://journals.asm.org/doi/10.1128/mBio.00822-17https://doaj.org/toc/2150-7511ABSTRACT Understanding the genetic basis of host shifts is a key genomic question for pathogen and parasite biology. The Bacillus cereus group, which encompasses Bacillus thuringiensis and Bacillus anthracis, contains pathogens that can infect insects, nematodes, and vertebrates. Since the target range of the essential virulence factors (Cry toxins) and many isolates is well known, this group presents a powerful system for investigating how pathogens can diversify and adapt to phylogenetically distant hosts. Specialization to exploit insects occurs at the level of the major clade and is associated with substantial changes in the core genome, and host switching between insect orders has occurred repeatedly within subclades. The transfer of plasmids with linked cry genes may account for much of the adaptation to particular insect orders, and network analysis implies that host specialization has produced strong associations between key toxin genes with similar targets. Analysis of the distribution of plasmid minireplicons shows that plasmids with orf156 and orf157, which carry genes encoding toxins against Lepidoptera or Diptera, were contained only by B. thuringiensis in the specialized insect clade (clade 2), indicating that tight genome/plasmid associations have been important in adaptation to invertebrate hosts. Moreover, the accumulation of multiple virulence factors on transposable elements suggests that cotransfer of diverse virulence factors is advantageous in terms of expanding the insecticidal spectrum, overcoming insect resistance, or through gains in pathogenicity via synergistic interactions between toxins. IMPORTANCE Population genomics have provided many new insights into the formation, evolution, and dynamics of bacterial pathogens of humans and other higher animals, but these pathogens usually have very narrow host ranges. As a pathogen of insects and nematodes, Bacillus thuringiensis, which produces toxins showing toxicity to many orders of insects and other invertebrates, can be used as a model to study the evolution of pathogens with wide host ranges. Phylogenomic analysis revealed that host specialization and switching occur at the level of the major clade and subclade, respectively. A toxin gene co-occurrence network indicates that multiple toxins with similar targets were accumulated by the same cell in the whole species. This accumulation may be one of the strategies that B. thuringiensis has used to fight against host resistance. This kind of formation and evolution of pathogens represents a different path used against multiple invertebrate hosts from that used against higher animals.Jinshui ZhengQiuling GaoLinlin LiuHualin LiuYueying WangDonghai PengLifang RuanBen RaymondMing SunAmerican Society for MicrobiologyarticleBacillus thuringiensishost specializationinvertebrate pathogenpopulation genomicsMicrobiologyQR1-502ENmBio, Vol 8, Iss 4 (2017)
institution DOAJ
collection DOAJ
language EN
topic Bacillus thuringiensis
host specialization
invertebrate pathogen
population genomics
Microbiology
QR1-502
spellingShingle Bacillus thuringiensis
host specialization
invertebrate pathogen
population genomics
Microbiology
QR1-502
Jinshui Zheng
Qiuling Gao
Linlin Liu
Hualin Liu
Yueying Wang
Donghai Peng
Lifang Ruan
Ben Raymond
Ming Sun
Comparative Genomics of <italic toggle="yes">Bacillus thuringiensis</italic> Reveals a Path to Specialized Exploitation of Multiple Invertebrate Hosts
description ABSTRACT Understanding the genetic basis of host shifts is a key genomic question for pathogen and parasite biology. The Bacillus cereus group, which encompasses Bacillus thuringiensis and Bacillus anthracis, contains pathogens that can infect insects, nematodes, and vertebrates. Since the target range of the essential virulence factors (Cry toxins) and many isolates is well known, this group presents a powerful system for investigating how pathogens can diversify and adapt to phylogenetically distant hosts. Specialization to exploit insects occurs at the level of the major clade and is associated with substantial changes in the core genome, and host switching between insect orders has occurred repeatedly within subclades. The transfer of plasmids with linked cry genes may account for much of the adaptation to particular insect orders, and network analysis implies that host specialization has produced strong associations between key toxin genes with similar targets. Analysis of the distribution of plasmid minireplicons shows that plasmids with orf156 and orf157, which carry genes encoding toxins against Lepidoptera or Diptera, were contained only by B. thuringiensis in the specialized insect clade (clade 2), indicating that tight genome/plasmid associations have been important in adaptation to invertebrate hosts. Moreover, the accumulation of multiple virulence factors on transposable elements suggests that cotransfer of diverse virulence factors is advantageous in terms of expanding the insecticidal spectrum, overcoming insect resistance, or through gains in pathogenicity via synergistic interactions between toxins. IMPORTANCE Population genomics have provided many new insights into the formation, evolution, and dynamics of bacterial pathogens of humans and other higher animals, but these pathogens usually have very narrow host ranges. As a pathogen of insects and nematodes, Bacillus thuringiensis, which produces toxins showing toxicity to many orders of insects and other invertebrates, can be used as a model to study the evolution of pathogens with wide host ranges. Phylogenomic analysis revealed that host specialization and switching occur at the level of the major clade and subclade, respectively. A toxin gene co-occurrence network indicates that multiple toxins with similar targets were accumulated by the same cell in the whole species. This accumulation may be one of the strategies that B. thuringiensis has used to fight against host resistance. This kind of formation and evolution of pathogens represents a different path used against multiple invertebrate hosts from that used against higher animals.
format article
author Jinshui Zheng
Qiuling Gao
Linlin Liu
Hualin Liu
Yueying Wang
Donghai Peng
Lifang Ruan
Ben Raymond
Ming Sun
author_facet Jinshui Zheng
Qiuling Gao
Linlin Liu
Hualin Liu
Yueying Wang
Donghai Peng
Lifang Ruan
Ben Raymond
Ming Sun
author_sort Jinshui Zheng
title Comparative Genomics of <italic toggle="yes">Bacillus thuringiensis</italic> Reveals a Path to Specialized Exploitation of Multiple Invertebrate Hosts
title_short Comparative Genomics of <italic toggle="yes">Bacillus thuringiensis</italic> Reveals a Path to Specialized Exploitation of Multiple Invertebrate Hosts
title_full Comparative Genomics of <italic toggle="yes">Bacillus thuringiensis</italic> Reveals a Path to Specialized Exploitation of Multiple Invertebrate Hosts
title_fullStr Comparative Genomics of <italic toggle="yes">Bacillus thuringiensis</italic> Reveals a Path to Specialized Exploitation of Multiple Invertebrate Hosts
title_full_unstemmed Comparative Genomics of <italic toggle="yes">Bacillus thuringiensis</italic> Reveals a Path to Specialized Exploitation of Multiple Invertebrate Hosts
title_sort comparative genomics of <italic toggle="yes">bacillus thuringiensis</italic> reveals a path to specialized exploitation of multiple invertebrate hosts
publisher American Society for Microbiology
publishDate 2017
url https://doaj.org/article/511eaa59d05049b7a3cb5590c0078527
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