Genetic Analysis of SARS-CoV-2 Variants in Mexico during the First Year of the COVID-19 Pandemic
During the first year of the SARS-CoV-2 pandemic in Mexico, more than two million people were infected. In this study, we analyzed full genome sequences from 27 February 2020 to 28 February 2021 to characterize the geographical and temporal distribution of SARS-CoV-2 lineages and identify the most c...
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2021
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oai:doaj.org-article:52b1151d314c46e29e62f54e562f0fca2021-11-25T19:12:56ZGenetic Analysis of SARS-CoV-2 Variants in Mexico during the First Year of the COVID-19 Pandemic10.3390/v131121611999-4915https://doaj.org/article/52b1151d314c46e29e62f54e562f0fca2021-10-01T00:00:00Zhttps://www.mdpi.com/1999-4915/13/11/2161https://doaj.org/toc/1999-4915During the first year of the SARS-CoV-2 pandemic in Mexico, more than two million people were infected. In this study, we analyzed full genome sequences from 27 February 2020 to 28 February 2021 to characterize the geographical and temporal distribution of SARS-CoV-2 lineages and identify the most common circulating lineages during this period. We defined six different geographical regions with particular dynamics of lineage circulation. The Northeast and Northwest regions were the ones that exhibited the highest lineage diversity, while the Central south and South/Southeast regions presented less diversity with predominance of a certain lineage. Additionally, by late February 2021, lineage B.1.1.519 represented more than 89% of all circulating lineages in the country.Blanca TaboadaSelene ZáratePavel IšaCelia BoukadidaJoel Armando Vazquez-PerezJosé Esteban Muñoz-MedinaJosé Ernesto Ramírez-GonzálezAndreu Comas-GarcíaConcepción Grajales-MuñizAlma Rincón-RubioMargarita Matías-FlorentinoAlejandro Sanchez-FloresEdgar Mendieta-CondadoJerome VerleyenGisela Barrera-BadilloLucía Hernández-RivasFidencio Mejía-NepomucenoJosé Arturo Martínez-OrozcoEduardo Becerril-VargasSusana LópezIrma López-MartínezSantiago Ávila-RíosCarlos F. AriasMDPI AGarticleviral diversitySARS-CoV-2genomic surveillanceMicrobiologyQR1-502ENViruses, Vol 13, Iss 2161, p 2161 (2021) |
| institution |
DOAJ |
| collection |
DOAJ |
| language |
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| topic |
viral diversity SARS-CoV-2 genomic surveillance Microbiology QR1-502 |
| spellingShingle |
viral diversity SARS-CoV-2 genomic surveillance Microbiology QR1-502 Blanca Taboada Selene Zárate Pavel Iša Celia Boukadida Joel Armando Vazquez-Perez José Esteban Muñoz-Medina José Ernesto Ramírez-González Andreu Comas-García Concepción Grajales-Muñiz Alma Rincón-Rubio Margarita Matías-Florentino Alejandro Sanchez-Flores Edgar Mendieta-Condado Jerome Verleyen Gisela Barrera-Badillo Lucía Hernández-Rivas Fidencio Mejía-Nepomuceno José Arturo Martínez-Orozco Eduardo Becerril-Vargas Susana López Irma López-Martínez Santiago Ávila-Ríos Carlos F. Arias Genetic Analysis of SARS-CoV-2 Variants in Mexico during the First Year of the COVID-19 Pandemic |
| description |
During the first year of the SARS-CoV-2 pandemic in Mexico, more than two million people were infected. In this study, we analyzed full genome sequences from 27 February 2020 to 28 February 2021 to characterize the geographical and temporal distribution of SARS-CoV-2 lineages and identify the most common circulating lineages during this period. We defined six different geographical regions with particular dynamics of lineage circulation. The Northeast and Northwest regions were the ones that exhibited the highest lineage diversity, while the Central south and South/Southeast regions presented less diversity with predominance of a certain lineage. Additionally, by late February 2021, lineage B.1.1.519 represented more than 89% of all circulating lineages in the country. |
| format |
article |
| author |
Blanca Taboada Selene Zárate Pavel Iša Celia Boukadida Joel Armando Vazquez-Perez José Esteban Muñoz-Medina José Ernesto Ramírez-González Andreu Comas-García Concepción Grajales-Muñiz Alma Rincón-Rubio Margarita Matías-Florentino Alejandro Sanchez-Flores Edgar Mendieta-Condado Jerome Verleyen Gisela Barrera-Badillo Lucía Hernández-Rivas Fidencio Mejía-Nepomuceno José Arturo Martínez-Orozco Eduardo Becerril-Vargas Susana López Irma López-Martínez Santiago Ávila-Ríos Carlos F. Arias |
| author_facet |
Blanca Taboada Selene Zárate Pavel Iša Celia Boukadida Joel Armando Vazquez-Perez José Esteban Muñoz-Medina José Ernesto Ramírez-González Andreu Comas-García Concepción Grajales-Muñiz Alma Rincón-Rubio Margarita Matías-Florentino Alejandro Sanchez-Flores Edgar Mendieta-Condado Jerome Verleyen Gisela Barrera-Badillo Lucía Hernández-Rivas Fidencio Mejía-Nepomuceno José Arturo Martínez-Orozco Eduardo Becerril-Vargas Susana López Irma López-Martínez Santiago Ávila-Ríos Carlos F. Arias |
| author_sort |
Blanca Taboada |
| title |
Genetic Analysis of SARS-CoV-2 Variants in Mexico during the First Year of the COVID-19 Pandemic |
| title_short |
Genetic Analysis of SARS-CoV-2 Variants in Mexico during the First Year of the COVID-19 Pandemic |
| title_full |
Genetic Analysis of SARS-CoV-2 Variants in Mexico during the First Year of the COVID-19 Pandemic |
| title_fullStr |
Genetic Analysis of SARS-CoV-2 Variants in Mexico during the First Year of the COVID-19 Pandemic |
| title_full_unstemmed |
Genetic Analysis of SARS-CoV-2 Variants in Mexico during the First Year of the COVID-19 Pandemic |
| title_sort |
genetic analysis of sars-cov-2 variants in mexico during the first year of the covid-19 pandemic |
| publisher |
MDPI AG |
| publishDate |
2021 |
| url |
https://doaj.org/article/52b1151d314c46e29e62f54e562f0fca |
| work_keys_str_mv |
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