Identification of somatic mutations in single cell DNA-seq using a spatial model of allelic imbalance
Single cell whole-genome sequencing data harbors information about somatic genetic variation but is challenging to analyze. Here, the authors develop a spatial model to correct for allelic amplification imbalance and a somatic SNV genotyper SCAN-SNV for analyzing single cell DNA sequencing data.
Enregistré dans:
Auteurs principaux: | Lovelace J. Luquette, Craig L. Bohrson, Max A. Sherman, Peter J. Park |
---|---|
Format: | article |
Langue: | EN |
Publié: |
Nature Portfolio
2019
|
Sujets: | |
Accès en ligne: | https://doaj.org/article/54f9af3e9c6f4cd1836227bb280a51be |
Tags: |
Ajouter un tag
Pas de tags, Soyez le premier à ajouter un tag!
|
Documents similaires
-
Allelic imbalance of somatic mutations in cancer genomes and transcriptomes
par: Je-Keun Rhee, et autres
Publié: (2017) -
Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets
par: Emily Berger, et autres
Publié: (2020) -
Contribution of allelic imbalance to colorectal cancer
par: Kimmo Palin, et autres
Publié: (2018) -
Identification of genes with allelic imbalance on 6p associated with nasopharyngeal carcinoma in southern Chinese.
par: Yan Li, et autres
Publié: (2011) -
Replicate sequencing libraries are important for quantification of allelic imbalance
par: Asia Mendelevich, et autres
Publié: (2021)