Identification of somatic mutations in single cell DNA-seq using a spatial model of allelic imbalance
Single cell whole-genome sequencing data harbors information about somatic genetic variation but is challenging to analyze. Here, the authors develop a spatial model to correct for allelic amplification imbalance and a somatic SNV genotyper SCAN-SNV for analyzing single cell DNA sequencing data.
Saved in:
Main Authors: | Lovelace J. Luquette, Craig L. Bohrson, Max A. Sherman, Peter J. Park |
---|---|
Format: | article |
Language: | EN |
Published: |
Nature Portfolio
2019
|
Subjects: | |
Online Access: | https://doaj.org/article/54f9af3e9c6f4cd1836227bb280a51be |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
-
Allelic imbalance of somatic mutations in cancer genomes and transcriptomes
by: Je-Keun Rhee, et al.
Published: (2017) -
Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets
by: Emily Berger, et al.
Published: (2020) -
Contribution of allelic imbalance to colorectal cancer
by: Kimmo Palin, et al.
Published: (2018) -
Identification of genes with allelic imbalance on 6p associated with nasopharyngeal carcinoma in southern Chinese.
by: Yan Li, et al.
Published: (2011) -
Replicate sequencing libraries are important for quantification of allelic imbalance
by: Asia Mendelevich, et al.
Published: (2021)