Genetic diversity and structure of Ganoderma boninense isolates from oil palm and other plantation crops

Abstract. Purba A, Hayati R, Putri LAP, Chalil D, Afandi D, Syahputra I, Basyuni M. 2020. Genetic diversity and structure of Ganoderma boninense isolates from oil palm and other plantation crops. Biodiversitas 21: 451-456. Oil palm is an economically important plant, which one of the most important...

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Autores principales:	AGUSTIAMAN PURBA, RAHMAH HAYATI, LOLLIE A.P. PUTRI, DIANA CHALIL, INDRA SYAHPUTRA, Mohammad Basyuni
Formato:	article
Lenguaje:	EN
Publicado:	MBI & UNS Solo 2020
Materias:	amova, ganoderma disease, microsatellite, polymorphism Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/55e23c34e8e1404a860a2a2abe37d4fe
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spelling	oai:doaj.org-article:55e23c34e8e1404a860a2a2abe37d4fe2021-11-21T22:01:10ZGenetic diversity and structure of Ganoderma boninense isolates from oil palm and other plantation crops1412-033X2085-472210.13057/biodiv/d210204https://doaj.org/article/55e23c34e8e1404a860a2a2abe37d4fe2020-01-01T00:00:00Zhttps://smujo.id/biodiv/article/view/5051https://doaj.org/toc/1412-033Xhttps://doaj.org/toc/2085-4722Abstract. Purba A, Hayati R, Putri LAP, Chalil D, Afandi D, Syahputra I, Basyuni M. 2020. Genetic diversity and structure of Ganoderma boninense isolates from oil palm and other plantation crops. Biodiversitas 21: 451-456. Oil palm is an economically important plant, which one of the most important sources of vegetable oil in the world. However, oil palm plantation and other crops face the treat basal stem rot (BSR) disease by Ganoderma boninense. A study on genetic diversity and structure of G. boninense is therefore needed in order to formulate improved control strategies for this disease. This work aimed to analyze the genetic diversity and structure of the G. boninense isolates derived from different hosts, 131 oil palm (Elaeis guineensis), six rubber (Hevea brasiliensis), three coconuts (Cocos nucifera), and three lontar palm (Borassus flabellifer). Genetic diversity and population structure of G. boninense isolates were investigated using six SSR markers with GenAlex 6.502 software. Results showed that several microsatellite loci indicated specific primary success rates, such as KT124402, KT124399, and KT124394, depicting high polymorphism content (>75%). This result suggested that these markers were equally effective in determining the polymorphisms of G. boninense isolates. A hierarchical analysis of molecular variance (AMOVA) revealed that genetic diversity mostly found among individuals within a population (88%), then among populations (8%), and within individuals (4%).. Phylogeny analysis showed two clusters of Ganoderma isolates. which was considered variation as dissimilar across with origin. The present study indicated that G. boninense from oil palm was predominantly comprised of a genetically distinct individual.AGUSTIAMAN PURBARAHMAH HAYATILOLLIE A.P. PUTRIDIANA CHALILINDRA SYAHPUTRAMohammad BasyuniMBI & UNS Soloarticleamova, ganoderma disease, microsatellite, polymorphismBiology (General)QH301-705.5ENBiodiversitas, Vol 21, Iss 2 (2020)
institution	DOAJ
collection	DOAJ
language	EN
topic	amova, ganoderma disease, microsatellite, polymorphism Biology (General) QH301-705.5
spellingShingle	amova, ganoderma disease, microsatellite, polymorphism Biology (General) QH301-705.5 AGUSTIAMAN PURBA RAHMAH HAYATI LOLLIE A.P. PUTRI DIANA CHALIL INDRA SYAHPUTRA Mohammad Basyuni Genetic diversity and structure of Ganoderma boninense isolates from oil palm and other plantation crops
description	Abstract. Purba A, Hayati R, Putri LAP, Chalil D, Afandi D, Syahputra I, Basyuni M. 2020. Genetic diversity and structure of Ganoderma boninense isolates from oil palm and other plantation crops. Biodiversitas 21: 451-456. Oil palm is an economically important plant, which one of the most important sources of vegetable oil in the world. However, oil palm plantation and other crops face the treat basal stem rot (BSR) disease by Ganoderma boninense. A study on genetic diversity and structure of G. boninense is therefore needed in order to formulate improved control strategies for this disease. This work aimed to analyze the genetic diversity and structure of the G. boninense isolates derived from different hosts, 131 oil palm (Elaeis guineensis), six rubber (Hevea brasiliensis), three coconuts (Cocos nucifera), and three lontar palm (Borassus flabellifer). Genetic diversity and population structure of G. boninense isolates were investigated using six SSR markers with GenAlex 6.502 software. Results showed that several microsatellite loci indicated specific primary success rates, such as KT124402, KT124399, and KT124394, depicting high polymorphism content (>75%). This result suggested that these markers were equally effective in determining the polymorphisms of G. boninense isolates. A hierarchical analysis of molecular variance (AMOVA) revealed that genetic diversity mostly found among individuals within a population (88%), then among populations (8%), and within individuals (4%).. Phylogeny analysis showed two clusters of Ganoderma isolates. which was considered variation as dissimilar across with origin. The present study indicated that G. boninense from oil palm was predominantly comprised of a genetically distinct individual.
format	article
author	AGUSTIAMAN PURBA RAHMAH HAYATI LOLLIE A.P. PUTRI DIANA CHALIL INDRA SYAHPUTRA Mohammad Basyuni
author_facet	AGUSTIAMAN PURBA RAHMAH HAYATI LOLLIE A.P. PUTRI DIANA CHALIL INDRA SYAHPUTRA Mohammad Basyuni
author_sort	AGUSTIAMAN PURBA
title	Genetic diversity and structure of Ganoderma boninense isolates from oil palm and other plantation crops
title_short	Genetic diversity and structure of Ganoderma boninense isolates from oil palm and other plantation crops
title_full	Genetic diversity and structure of Ganoderma boninense isolates from oil palm and other plantation crops
title_fullStr	Genetic diversity and structure of Ganoderma boninense isolates from oil palm and other plantation crops
title_full_unstemmed	Genetic diversity and structure of Ganoderma boninense isolates from oil palm and other plantation crops
title_sort	genetic diversity and structure of ganoderma boninense isolates from oil palm and other plantation crops
publisher	MBI & UNS Solo
publishDate	2020
url	https://doaj.org/article/55e23c34e8e1404a860a2a2abe37d4fe
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Genetic diversity and structure of Ganoderma boninense isolates from oil palm and other plantation crops

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