Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps

Sequencing platforms, such as Oxford Nanopore or Pacific Biosciences generate long-read data that preserve long-range genomic information but have high error rates. Here, the authors develop MetaMaps, a computational tool for strain-level metagenomic assignment and compositional estimation using lon...

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Autores principales:	Alexander T. Dilthey, Chirag Jain, Sergey Koren, Adam M. Phillippy
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2019
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/57820116309a478cb2e127b4d5324a61
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spelling	oai:doaj.org-article:57820116309a478cb2e127b4d5324a612021-12-02T15:36:03ZStrain-level metagenomic assignment and compositional estimation for long reads with MetaMaps10.1038/s41467-019-10934-22041-1723https://doaj.org/article/57820116309a478cb2e127b4d5324a612019-07-01T00:00:00Zhttps://doi.org/10.1038/s41467-019-10934-2https://doaj.org/toc/2041-1723Sequencing platforms, such as Oxford Nanopore or Pacific Biosciences generate long-read data that preserve long-range genomic information but have high error rates. Here, the authors develop MetaMaps, a computational tool for strain-level metagenomic assignment and compositional estimation using long reads.Alexander T. DiltheyChirag JainSergey KorenAdam M. PhillippyNature PortfolioarticleScienceQENNature Communications, Vol 10, Iss 1, Pp 1-12 (2019)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Alexander T. Dilthey Chirag Jain Sergey Koren Adam M. Phillippy Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps
description	Sequencing platforms, such as Oxford Nanopore or Pacific Biosciences generate long-read data that preserve long-range genomic information but have high error rates. Here, the authors develop MetaMaps, a computational tool for strain-level metagenomic assignment and compositional estimation using long reads.
format	article
author	Alexander T. Dilthey Chirag Jain Sergey Koren Adam M. Phillippy
author_facet	Alexander T. Dilthey Chirag Jain Sergey Koren Adam M. Phillippy
author_sort	Alexander T. Dilthey
title	Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps
title_short	Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps
title_full	Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps
title_fullStr	Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps
title_full_unstemmed	Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps
title_sort	strain-level metagenomic assignment and compositional estimation for long reads with metamaps
publisher	Nature Portfolio
publishDate	2019
url	https://doaj.org/article/57820116309a478cb2e127b4d5324a61
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Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps

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