Genomic features of Mycobacterium avium subsp. hominissuis isolated from pigs in Japan
Mycobacterium avium subsp. hominissuis (MAH) is one of the most important agents causing non-tuberculosis mycobacterial infection in humans and pigs. There have been advances in genome analysis of MAH from human isolates, but studies of isolates from pigs are limited despite its potenti...
Guardado en:
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , |
|---|---|
| Formato: | article |
| Lenguaje: | EN |
| Publicado: |
GigaScience Press
2021
|
| Materias: | |
| Acceso en línea: | https://doaj.org/article/5bfa8dc943ca4bd69dad5f2fe5ec766f |
| Etiquetas: |
Agregar Etiqueta
Sin Etiquetas, Sea el primero en etiquetar este registro!
|
| id |
oai:doaj.org-article:5bfa8dc943ca4bd69dad5f2fe5ec766f |
|---|---|
| record_format |
dspace |
| spelling |
oai:doaj.org-article:5bfa8dc943ca4bd69dad5f2fe5ec766f2021-11-12T11:49:31ZGenomic features of Mycobacterium avium subsp. hominissuis isolated from pigs in Japan10.46471/gigabyte.332709-4715https://doaj.org/article/5bfa8dc943ca4bd69dad5f2fe5ec766f2021-11-01T00:00:00Zhttps://gigabytejournal.com/articles/33https://doaj.org/toc/2709-4715 Mycobacterium avium subsp. hominissuis (MAH) is one of the most important agents causing non-tuberculosis mycobacterial infection in humans and pigs. There have been advances in genome analysis of MAH from human isolates, but studies of isolates from pigs are limited despite its potential source of infection to human. Here, we obtained 30 draft genome sequences of MAH from pigs reared in Japan. The 30 draft genomes were 4,848,678–5,620,788 bp in length, comprising 4652–5388 coding genes and 46–75 (median: 47) tRNAs. All isolates had restriction modification-associated genes and 185–222 predicted virulence genes. Two isolates had tRNA arrays and one isolate had a clustered regularly interspaced short palindromic repeat (CRISPR) region. Our results will be useful for evaluation of the ecology of MAH by providing a foundation for genome-based epidemiological studies. Tetsuya KomatsuKenji OhyaAtsushi OtaYukiko NishiuchiHirokazu YanoKayoko MatsuoJustice Opare OdoiShota SuganumaKotaro SawaiAkemi HasebeTetsuo AsaiTokuma YanaiHideto FukushiTakayuki WadaShiomi YoshidaToshihiro ItoKentaro ArikawaMikihiko KawaiManabu AtoAnthony D BaughnTomotada IwamotoFumito MaruyamaGigaScience PressarticleElectronic computers. Computer scienceQA75.5-76.95ENGigaByte (2021) |
| institution |
DOAJ |
| collection |
DOAJ |
| language |
EN |
| topic |
Electronic computers. Computer science QA75.5-76.95 |
| spellingShingle |
Electronic computers. Computer science QA75.5-76.95 Tetsuya Komatsu Kenji Ohya Atsushi Ota Yukiko Nishiuchi Hirokazu Yano Kayoko Matsuo Justice Opare Odoi Shota Suganuma Kotaro Sawai Akemi Hasebe Tetsuo Asai Tokuma Yanai Hideto Fukushi Takayuki Wada Shiomi Yoshida Toshihiro Ito Kentaro Arikawa Mikihiko Kawai Manabu Ato Anthony D Baughn Tomotada Iwamoto Fumito Maruyama Genomic features of Mycobacterium avium subsp. hominissuis isolated from pigs in Japan |
| description |
Mycobacterium avium subsp. hominissuis (MAH) is one of the most important agents causing non-tuberculosis mycobacterial infection in humans and pigs. There have been advances in genome analysis of MAH from human isolates, but studies of isolates from pigs are limited despite its potential source of infection to human. Here, we obtained 30 draft genome sequences of MAH from pigs reared in Japan. The 30 draft genomes were 4,848,678–5,620,788 bp in length, comprising 4652–5388 coding genes and 46–75 (median: 47) tRNAs. All isolates had restriction modification-associated genes and 185–222 predicted virulence genes. Two isolates had tRNA arrays and one isolate had a clustered regularly interspaced short palindromic repeat (CRISPR) region. Our results will be useful for evaluation of the ecology of MAH by providing a foundation for genome-based epidemiological studies.
|
| format |
article |
| author |
Tetsuya Komatsu Kenji Ohya Atsushi Ota Yukiko Nishiuchi Hirokazu Yano Kayoko Matsuo Justice Opare Odoi Shota Suganuma Kotaro Sawai Akemi Hasebe Tetsuo Asai Tokuma Yanai Hideto Fukushi Takayuki Wada Shiomi Yoshida Toshihiro Ito Kentaro Arikawa Mikihiko Kawai Manabu Ato Anthony D Baughn Tomotada Iwamoto Fumito Maruyama |
| author_facet |
Tetsuya Komatsu Kenji Ohya Atsushi Ota Yukiko Nishiuchi Hirokazu Yano Kayoko Matsuo Justice Opare Odoi Shota Suganuma Kotaro Sawai Akemi Hasebe Tetsuo Asai Tokuma Yanai Hideto Fukushi Takayuki Wada Shiomi Yoshida Toshihiro Ito Kentaro Arikawa Mikihiko Kawai Manabu Ato Anthony D Baughn Tomotada Iwamoto Fumito Maruyama |
| author_sort |
Tetsuya Komatsu |
| title |
Genomic features of Mycobacterium avium subsp. hominissuis isolated from pigs in Japan |
| title_short |
Genomic features of Mycobacterium avium subsp. hominissuis isolated from pigs in Japan |
| title_full |
Genomic features of Mycobacterium avium subsp. hominissuis isolated from pigs in Japan |
| title_fullStr |
Genomic features of Mycobacterium avium subsp. hominissuis isolated from pigs in Japan |
| title_full_unstemmed |
Genomic features of Mycobacterium avium subsp. hominissuis isolated from pigs in Japan |
| title_sort |
genomic features of mycobacterium avium subsp. hominissuis isolated from pigs in japan |
| publisher |
GigaScience Press |
| publishDate |
2021 |
| url |
https://doaj.org/article/5bfa8dc943ca4bd69dad5f2fe5ec766f |
| work_keys_str_mv |
AT tetsuyakomatsu genomicfeaturesofmycobacteriumaviumsubsphominissuisisolatedfrompigsinjapan AT kenjiohya genomicfeaturesofmycobacteriumaviumsubsphominissuisisolatedfrompigsinjapan AT atsushiota genomicfeaturesofmycobacteriumaviumsubsphominissuisisolatedfrompigsinjapan AT yukikonishiuchi genomicfeaturesofmycobacteriumaviumsubsphominissuisisolatedfrompigsinjapan AT hirokazuyano genomicfeaturesofmycobacteriumaviumsubsphominissuisisolatedfrompigsinjapan AT kayokomatsuo genomicfeaturesofmycobacteriumaviumsubsphominissuisisolatedfrompigsinjapan AT justiceopareodoi genomicfeaturesofmycobacteriumaviumsubsphominissuisisolatedfrompigsinjapan AT shotasuganuma genomicfeaturesofmycobacteriumaviumsubsphominissuisisolatedfrompigsinjapan AT kotarosawai genomicfeaturesofmycobacteriumaviumsubsphominissuisisolatedfrompigsinjapan AT akemihasebe genomicfeaturesofmycobacteriumaviumsubsphominissuisisolatedfrompigsinjapan AT tetsuoasai genomicfeaturesofmycobacteriumaviumsubsphominissuisisolatedfrompigsinjapan AT tokumayanai genomicfeaturesofmycobacteriumaviumsubsphominissuisisolatedfrompigsinjapan AT hidetofukushi genomicfeaturesofmycobacteriumaviumsubsphominissuisisolatedfrompigsinjapan AT takayukiwada genomicfeaturesofmycobacteriumaviumsubsphominissuisisolatedfrompigsinjapan AT shiomiyoshida genomicfeaturesofmycobacteriumaviumsubsphominissuisisolatedfrompigsinjapan AT toshihiroito genomicfeaturesofmycobacteriumaviumsubsphominissuisisolatedfrompigsinjapan AT kentaroarikawa genomicfeaturesofmycobacteriumaviumsubsphominissuisisolatedfrompigsinjapan AT mikihikokawai genomicfeaturesofmycobacteriumaviumsubsphominissuisisolatedfrompigsinjapan AT manabuato genomicfeaturesofmycobacteriumaviumsubsphominissuisisolatedfrompigsinjapan AT anthonydbaughn genomicfeaturesofmycobacteriumaviumsubsphominissuisisolatedfrompigsinjapan AT tomotadaiwamoto genomicfeaturesofmycobacteriumaviumsubsphominissuisisolatedfrompigsinjapan AT fumitomaruyama genomicfeaturesofmycobacteriumaviumsubsphominissuisisolatedfrompigsinjapan |
| _version_ |
1718430554550960128 |