The male and female gonad transcriptome of the edible sea urchin, Paracentrotus lividus: Identification of sex-related and lipid biosynthesis genes

Paracentrotus lividus is the most abundant, geographically distributed, and desirable echinoid species in Europe. Although economically important, this species has scarce genomic resources available. Here, we produced and comprehensively characterized the male and female gonad transcriptome of P. li...

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Autores principales:	André M. Machado, Sergio Fernández-Boo, Manuel Nande, Rui Pinto, Benjamin Costas, L. Filipe C. Castro
Formato:	article
Lenguaje:	EN
Publicado:	Elsevier 2022
Materias:	Paracentrotus lividus Gonad Sexual development Lipid biosynthesis genes Aquaculture. Fisheries. Angling SH1-691
Acceso en línea:	https://doaj.org/article/5f6f2318d08b4b4c8f603171a05532df
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spelling	oai:doaj.org-article:5f6f2318d08b4b4c8f603171a05532df2021-11-14T04:34:22ZThe male and female gonad transcriptome of the edible sea urchin, Paracentrotus lividus: Identification of sex-related and lipid biosynthesis genes2352-513410.1016/j.aqrep.2021.100936https://doaj.org/article/5f6f2318d08b4b4c8f603171a05532df2022-02-01T00:00:00Zhttp://www.sciencedirect.com/science/article/pii/S2352513421003537https://doaj.org/toc/2352-5134Paracentrotus lividus is the most abundant, geographically distributed, and desirable echinoid species in Europe. Although economically important, this species has scarce genomic resources available. Here, we produced and comprehensively characterized the male and female gonad transcriptome of P. lividus. The P. lividus transcriptome assembly has 53,865 transcripts, an N50 transcript length of 1842 bp, and an estimated gene completeness of 97.4% and 95.6% in Eukaryota and Metazoa BUSCO databases, respectively. Differential gene expression analyses yielded a total of 3371 and 3351 up-regulated genes in P. lividus male and female gonad tissues, respectively. Additionally, we analyzed and validated a catalog of transcripts pivotal in sexual development and determination (206 transcripts) as well as in biosynthesis and storage of lipids (119 transcripts) in male and female specimens. This study provides a valuable resource and will contribute to the future conservation of the P. lividus species as well as its exploitation in an aquaculture setting.André M. MachadoSergio Fernández-BooManuel NandeRui PintoBenjamin CostasL. Filipe C. CastroElsevierarticleParacentrotus lividusGonadSexual developmentLipid biosynthesis genesAquaculture. Fisheries. AnglingSH1-691ENAquaculture Reports, Vol 22, Iss , Pp 100936- (2022)
institution	DOAJ
collection	DOAJ
language	EN
topic	Paracentrotus lividus Gonad Sexual development Lipid biosynthesis genes Aquaculture. Fisheries. Angling SH1-691
spellingShingle	Paracentrotus lividus Gonad Sexual development Lipid biosynthesis genes Aquaculture. Fisheries. Angling SH1-691 André M. Machado Sergio Fernández-Boo Manuel Nande Rui Pinto Benjamin Costas L. Filipe C. Castro The male and female gonad transcriptome of the edible sea urchin, Paracentrotus lividus: Identification of sex-related and lipid biosynthesis genes
description	Paracentrotus lividus is the most abundant, geographically distributed, and desirable echinoid species in Europe. Although economically important, this species has scarce genomic resources available. Here, we produced and comprehensively characterized the male and female gonad transcriptome of P. lividus. The P. lividus transcriptome assembly has 53,865 transcripts, an N50 transcript length of 1842 bp, and an estimated gene completeness of 97.4% and 95.6% in Eukaryota and Metazoa BUSCO databases, respectively. Differential gene expression analyses yielded a total of 3371 and 3351 up-regulated genes in P. lividus male and female gonad tissues, respectively. Additionally, we analyzed and validated a catalog of transcripts pivotal in sexual development and determination (206 transcripts) as well as in biosynthesis and storage of lipids (119 transcripts) in male and female specimens. This study provides a valuable resource and will contribute to the future conservation of the P. lividus species as well as its exploitation in an aquaculture setting.
format	article
author	André M. Machado Sergio Fernández-Boo Manuel Nande Rui Pinto Benjamin Costas L. Filipe C. Castro
author_facet	André M. Machado Sergio Fernández-Boo Manuel Nande Rui Pinto Benjamin Costas L. Filipe C. Castro
author_sort	André M. Machado
title	The male and female gonad transcriptome of the edible sea urchin, Paracentrotus lividus: Identification of sex-related and lipid biosynthesis genes
title_short	The male and female gonad transcriptome of the edible sea urchin, Paracentrotus lividus: Identification of sex-related and lipid biosynthesis genes
title_full	The male and female gonad transcriptome of the edible sea urchin, Paracentrotus lividus: Identification of sex-related and lipid biosynthesis genes
title_fullStr	The male and female gonad transcriptome of the edible sea urchin, Paracentrotus lividus: Identification of sex-related and lipid biosynthesis genes
title_full_unstemmed	The male and female gonad transcriptome of the edible sea urchin, Paracentrotus lividus: Identification of sex-related and lipid biosynthesis genes
title_sort	male and female gonad transcriptome of the edible sea urchin, paracentrotus lividus: identification of sex-related and lipid biosynthesis genes
publisher	Elsevier
publishDate	2022
url	https://doaj.org/article/5f6f2318d08b4b4c8f603171a05532df
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The male and female gonad transcriptome of the edible sea urchin, Paracentrotus lividus: Identification of sex-related and lipid biosynthesis genes

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