Strainberry: automated strain separation in low-complexity metagenomes using long reads

Existing long-read de novo assembly methods can partially, but not completely, separate strains. Here, the authors develop Strainberry, a metagenome assembly bioinformatic pipeline that exclusively uses longread data to accurately separate and reconstruct strain genomes from single-sample low-comple...

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Autores principales:	Riccardo Vicedomini, Christopher Quince, Aaron E. Darling, Rayan Chikhi
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2021
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/6319ba8e68474bc9b3176b9f70701619
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spelling	oai:doaj.org-article:6319ba8e68474bc9b3176b9f707016192021-12-02T16:17:53ZStrainberry: automated strain separation in low-complexity metagenomes using long reads10.1038/s41467-021-24515-92041-1723https://doaj.org/article/6319ba8e68474bc9b3176b9f707016192021-07-01T00:00:00Zhttps://doi.org/10.1038/s41467-021-24515-9https://doaj.org/toc/2041-1723Existing long-read de novo assembly methods can partially, but not completely, separate strains. Here, the authors develop Strainberry, a metagenome assembly bioinformatic pipeline that exclusively uses longread data to accurately separate and reconstruct strain genomes from single-sample low-complexity microbiomes.Riccardo VicedominiChristopher QuinceAaron E. DarlingRayan ChikhiNature PortfolioarticleScienceQENNature Communications, Vol 12, Iss 1, Pp 1-14 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Riccardo Vicedomini Christopher Quince Aaron E. Darling Rayan Chikhi Strainberry: automated strain separation in low-complexity metagenomes using long reads
description	Existing long-read de novo assembly methods can partially, but not completely, separate strains. Here, the authors develop Strainberry, a metagenome assembly bioinformatic pipeline that exclusively uses longread data to accurately separate and reconstruct strain genomes from single-sample low-complexity microbiomes.
format	article
author	Riccardo Vicedomini Christopher Quince Aaron E. Darling Rayan Chikhi
author_facet	Riccardo Vicedomini Christopher Quince Aaron E. Darling Rayan Chikhi
author_sort	Riccardo Vicedomini
title	Strainberry: automated strain separation in low-complexity metagenomes using long reads
title_short	Strainberry: automated strain separation in low-complexity metagenomes using long reads
title_full	Strainberry: automated strain separation in low-complexity metagenomes using long reads
title_fullStr	Strainberry: automated strain separation in low-complexity metagenomes using long reads
title_full_unstemmed	Strainberry: automated strain separation in low-complexity metagenomes using long reads
title_sort	strainberry: automated strain separation in low-complexity metagenomes using long reads
publisher	Nature Portfolio
publishDate	2021
url	https://doaj.org/article/6319ba8e68474bc9b3176b9f70701619
work_keys_str_mv	AT riccardovicedomini strainberryautomatedstrainseparationinlowcomplexitymetagenomesusinglongreads AT christopherquince strainberryautomatedstrainseparationinlowcomplexitymetagenomesusinglongreads AT aaronedarling strainberryautomatedstrainseparationinlowcomplexitymetagenomesusinglongreads AT rayanchikhi strainberryautomatedstrainseparationinlowcomplexitymetagenomesusinglongreads
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Strainberry: automated strain separation in low-complexity metagenomes using long reads

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