In silico validation of microalgal metabolites against Diabetes mellitus
Aim. Present study aimed to evaluate the efficiency of microalgal metabolites as ligands for anti-diabetic target proteins viz., glucokinase, fructose-1, 6-bisphosphatase, glycogen synthase kinase, cytochrome P450, multi drug resistant protein, and peroxisome proliferator-activated receptor-&gam...
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Endocrinology Research Centre
2017
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oai:doaj.org-article:66200f34a4e24aada8925739f64102ab2021-11-14T09:00:21ZIn silico validation of microalgal metabolites against Diabetes mellitus2072-03512072-037810.14341/DM8212https://doaj.org/article/66200f34a4e24aada8925739f64102ab2017-10-01T00:00:00Zhttps://www.dia-endojournals.ru/jour/article/view/8212https://doaj.org/toc/2072-0351https://doaj.org/toc/2072-0378Aim. Present study aimed to evaluate the efficiency of microalgal metabolites as ligands for anti-diabetic target proteins viz., glucokinase, fructose-1, 6-bisphosphatase, glycogen synthase kinase, cytochrome P450, multi drug resistant protein, and peroxisome proliferator-activated receptor-γ(PPARγ) via computational approach. Matherials and methods. Three-dimensional structures of microalgal metabolites were retrieved from PubChem database and were energy minimized. The active site of target protein was predicted through PDB sum. Molecular docking was performed with microalgae metabolites by using Hex 8.0 and DockThor server. Results. Hex docking revealed that the binding interaction of fucoxanthin was higher with fructose 1.6 bis-phosphatase (-298.31), human multidrug resistant protein 1 (-369.67), and PPARγ (-404.18). DockThor docking indicated that zeaxanthin with glucokinase produced higher total energy (111.23 kcal/mol) and interaction energy (-2.99 kcal/mol). Lutein with fructose 1.6 bis phosphatase, human multidrug resistant protein, glycogen synthase kinase, PPARγ and cytochrome p450 produced higher total energy and interaction energy. Conclusion. Further studies will assess the anti-diabetic effect of carotenoids of microalgae especially lutein, zeaxanthin and fucoxanthin.Gurudeeban SelvarajSatyavani KaliamurthiZeynep Elibol ÇakmakTurgay ÇakmakEndocrinology Research Centrearticlecarotenoiddiabetes mellitusdockthorglucokinasemicroalgaeNutritional diseases. Deficiency diseasesRC620-627ENRUСахарный диабет, Vol 20, Iss 4, Pp 301-307 (2017) |
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DOAJ |
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EN RU |
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carotenoid diabetes mellitus dockthor glucokinase microalgae Nutritional diseases. Deficiency diseases RC620-627 |
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carotenoid diabetes mellitus dockthor glucokinase microalgae Nutritional diseases. Deficiency diseases RC620-627 Gurudeeban Selvaraj Satyavani Kaliamurthi Zeynep Elibol Çakmak Turgay Çakmak In silico validation of microalgal metabolites against Diabetes mellitus |
| description |
Aim. Present study aimed to evaluate the efficiency of microalgal metabolites as ligands for anti-diabetic target proteins viz., glucokinase, fructose-1, 6-bisphosphatase, glycogen synthase kinase, cytochrome P450, multi drug resistant protein, and peroxisome proliferator-activated receptor-γ(PPARγ) via computational approach.
Matherials and methods. Three-dimensional structures of microalgal metabolites were retrieved from PubChem database and were energy minimized. The active site of target protein was predicted through PDB sum. Molecular docking was performed with microalgae metabolites by using Hex 8.0 and DockThor server.
Results. Hex docking revealed that the binding interaction of fucoxanthin was higher with fructose 1.6 bis-phosphatase (-298.31), human multidrug resistant protein 1 (-369.67), and PPARγ (-404.18). DockThor docking indicated that zeaxanthin with glucokinase produced higher total energy (111.23 kcal/mol) and interaction energy (-2.99 kcal/mol). Lutein with fructose 1.6 bis phosphatase, human multidrug resistant protein, glycogen synthase kinase, PPARγ and cytochrome p450 produced higher total energy and interaction energy.
Conclusion. Further studies will assess the anti-diabetic effect of carotenoids of microalgae especially lutein, zeaxanthin and fucoxanthin. |
| format |
article |
| author |
Gurudeeban Selvaraj Satyavani Kaliamurthi Zeynep Elibol Çakmak Turgay Çakmak |
| author_facet |
Gurudeeban Selvaraj Satyavani Kaliamurthi Zeynep Elibol Çakmak Turgay Çakmak |
| author_sort |
Gurudeeban Selvaraj |
| title |
In silico validation of microalgal metabolites against Diabetes mellitus |
| title_short |
In silico validation of microalgal metabolites against Diabetes mellitus |
| title_full |
In silico validation of microalgal metabolites against Diabetes mellitus |
| title_fullStr |
In silico validation of microalgal metabolites against Diabetes mellitus |
| title_full_unstemmed |
In silico validation of microalgal metabolites against Diabetes mellitus |
| title_sort |
in silico validation of microalgal metabolites against diabetes mellitus |
| publisher |
Endocrinology Research Centre |
| publishDate |
2017 |
| url |
https://doaj.org/article/66200f34a4e24aada8925739f64102ab |
| work_keys_str_mv |
AT gurudeebanselvaraj insilicovalidationofmicroalgalmetabolitesagainstdiabetesmellitus AT satyavanikaliamurthi insilicovalidationofmicroalgalmetabolitesagainstdiabetesmellitus AT zeynepelibolcakmak insilicovalidationofmicroalgalmetabolitesagainstdiabetesmellitus AT turgaycakmak insilicovalidationofmicroalgalmetabolitesagainstdiabetesmellitus |
| _version_ |
1718429533253664768 |