Short Communication: Phylogenetic analysis of mango (Mangifera) in Northern Sumatra based on gene sequences of cpDNA trnL-F intergenic spacer

Harahap SP, Fitmawati, Sofiyanti N. 2017. Short Communication: Phylogenetic analysis of mango (Mangifera) in Northern Sumatra based on gene sequences of cpDNA trnL-F intergenic spacer. Biodiversitas 18: 715-719. Northern Sumatra is an area with geographical variation. The environmental factors are a...

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Autores principales:	FITMAWATI FITMAWATI, SANDI PRATIWI HARAHAP, NERY SOFIYANTI
Formato:	article
Lenguaje:	EN
Publicado:	MBI & UNS Solo 2017
Materias:	northern sumatra mangifera molecular phylogeny trnl-f intergenic spacer Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/66ce331399b64c53bfcf75086a3312a2
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spelling	oai:doaj.org-article:66ce331399b64c53bfcf75086a3312a22021-11-16T13:52:30ZShort Communication: Phylogenetic analysis of mango (Mangifera) in Northern Sumatra based on gene sequences of cpDNA trnL-F intergenic spacer1412-033X2085-472210.13057/biodiv/d180238https://doaj.org/article/66ce331399b64c53bfcf75086a3312a22017-04-01T00:00:00Zhttps://smujo.id/biodiv/article/view/1695https://doaj.org/toc/1412-033Xhttps://doaj.org/toc/2085-4722Harahap SP, Fitmawati, Sofiyanti N. 2017. Short Communication: Phylogenetic analysis of mango (Mangifera) in Northern Sumatra based on gene sequences of cpDNA trnL-F intergenic spacer. Biodiversitas 18: 715-719. Northern Sumatra is an area with geographical variation. The environmental factors are affected on character plasticity such as found in Anacardiaceae family especially Mangifera genus. The character plasticity of Mangifera members raises a problem in determining clear boundaries between species based on morphological character. Therefore, a molecular approach is necessary to provide a specific character among Mangifera species. This study aimed to reconstruct the phylogeny among Mangifera members in Northern Sumatra based on the sequences of trnLF intergenic spacer. All of the sequences were aligned by using Clustal W and Cladogram was reconstructed by using PAUP by Maximum Parsimony (MP) and Neighbour-Joining (NJ) methods. The MP cladogram produced two in groups i.e., clade I consist of M. odorata1, M. odorata2, M. laurina1, M. laurina2, M. indica, M. zeylanica, M. quadrifida and Mangifera sp. and clade II consisted of M. foetida1 and M. foetida2. Based on the NJ method, it was obtained M. laurina2 which had the highest genetic distance among other members of Mangifera. The trnL-F intergenic spacer with a low sequences variation indicated that this region was highly conserved and had a low evolution rate in Mangifera.FITMAWATI FITMAWATISANDI PRATIWI HARAHAPNERY SOFIYANTIMBI & UNS Soloarticlenorthern sumatramangiferamolecular phylogenytrnl-f intergenic spacerBiology (General)QH301-705.5ENBiodiversitas, Vol 18, Iss 2, Pp 715-719 (2017)
institution	DOAJ
collection	DOAJ
language	EN
topic	northern sumatra mangifera molecular phylogeny trnl-f intergenic spacer Biology (General) QH301-705.5
spellingShingle	northern sumatra mangifera molecular phylogeny trnl-f intergenic spacer Biology (General) QH301-705.5 FITMAWATI FITMAWATI SANDI PRATIWI HARAHAP NERY SOFIYANTI Short Communication: Phylogenetic analysis of mango (Mangifera) in Northern Sumatra based on gene sequences of cpDNA trnL-F intergenic spacer
description	Harahap SP, Fitmawati, Sofiyanti N. 2017. Short Communication: Phylogenetic analysis of mango (Mangifera) in Northern Sumatra based on gene sequences of cpDNA trnL-F intergenic spacer. Biodiversitas 18: 715-719. Northern Sumatra is an area with geographical variation. The environmental factors are affected on character plasticity such as found in Anacardiaceae family especially Mangifera genus. The character plasticity of Mangifera members raises a problem in determining clear boundaries between species based on morphological character. Therefore, a molecular approach is necessary to provide a specific character among Mangifera species. This study aimed to reconstruct the phylogeny among Mangifera members in Northern Sumatra based on the sequences of trnLF intergenic spacer. All of the sequences were aligned by using Clustal W and Cladogram was reconstructed by using PAUP by Maximum Parsimony (MP) and Neighbour-Joining (NJ) methods. The MP cladogram produced two in groups i.e., clade I consist of M. odorata1, M. odorata2, M. laurina1, M. laurina2, M. indica, M. zeylanica, M. quadrifida and Mangifera sp. and clade II consisted of M. foetida1 and M. foetida2. Based on the NJ method, it was obtained M. laurina2 which had the highest genetic distance among other members of Mangifera. The trnL-F intergenic spacer with a low sequences variation indicated that this region was highly conserved and had a low evolution rate in Mangifera.
format	article
author	FITMAWATI FITMAWATI SANDI PRATIWI HARAHAP NERY SOFIYANTI
author_facet	FITMAWATI FITMAWATI SANDI PRATIWI HARAHAP NERY SOFIYANTI
author_sort	FITMAWATI FITMAWATI
title	Short Communication: Phylogenetic analysis of mango (Mangifera) in Northern Sumatra based on gene sequences of cpDNA trnL-F intergenic spacer
title_short	Short Communication: Phylogenetic analysis of mango (Mangifera) in Northern Sumatra based on gene sequences of cpDNA trnL-F intergenic spacer
title_full	Short Communication: Phylogenetic analysis of mango (Mangifera) in Northern Sumatra based on gene sequences of cpDNA trnL-F intergenic spacer
title_fullStr	Short Communication: Phylogenetic analysis of mango (Mangifera) in Northern Sumatra based on gene sequences of cpDNA trnL-F intergenic spacer
title_full_unstemmed	Short Communication: Phylogenetic analysis of mango (Mangifera) in Northern Sumatra based on gene sequences of cpDNA trnL-F intergenic spacer
title_sort	short communication: phylogenetic analysis of mango (mangifera) in northern sumatra based on gene sequences of cpdna trnl-f intergenic spacer
publisher	MBI & UNS Solo
publishDate	2017
url	https://doaj.org/article/66ce331399b64c53bfcf75086a3312a2
work_keys_str_mv	AT fitmawatifitmawati shortcommunicationphylogeneticanalysisofmangomangiferainnorthernsumatrabasedongenesequencesofcpdnatrnlfintergenicspacer AT sandipratiwiharahap shortcommunicationphylogeneticanalysisofmangomangiferainnorthernsumatrabasedongenesequencesofcpdnatrnlfintergenicspacer AT nerysofiyanti shortcommunicationphylogeneticanalysisofmangomangiferainnorthernsumatrabasedongenesequencesofcpdnatrnlfintergenicspacer
_version_	1718426485382971392

Short Communication: Phylogenetic analysis of mango (Mangifera) in Northern Sumatra based on gene sequences of cpDNA trnL-F intergenic spacer

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