Superenhancer–transcription factor regulatory network in malignant tumors

Código QR

Superenhancer–transcription factor regulatory network in malignant tumors

This study aims to identify superenhancer (SE)–transcriptional factor (TF) regulatory network related to eight common malignant tumors based on ChIP-seq data modified by histone H3K27ac in the enhancer region of the SRA database.

Guardado en:

Detalles Bibliográficos
Autores principales:	Liang Yuan, Li Linlin, Xin Tian, Li Binru, Zhang Dalin
Formato:	article
Lenguaje:	EN
Publicado:	De Gruyter 2021
Materias:	malignant tumors super enhancers transcription factors chip-seq rna-seq core regulatory circuitry superenhancer–transcription factor regulatory network Medicine R
Acceso en línea:	https://doaj.org/article/6a46785b4db64d48bb07bc8d22b74050
Etiquetas:	Agregar Etiqueta Sin Etiquetas, Sea el primero en etiquetar este registro!

Ejemplares similares

Transcription Inhibitors with XRE DNA-Binding and Cupin Signal-Sensing Domains Drive Metabolic Diversification in <italic toggle="yes">Pseudomonas</italic>
por: Julian Trouillon, et al.
Publicado: (2021)

Widespread Strain-Specific Distinctions in Chromosomal Binding Dynamics of a Highly Conserved <named-content content-type="genus-species">Escherichia coli</named-content> Transcription Factor
por: James P. R. Connolly, et al.
Publicado: (2020)

Gene regulatory networks controlling temporal patterning, neurogenesis, and cell-fate specification in mammalian retina
por: Pin Lyu, et al.
Publicado: (2021)

The Basic Helix-Loop-Helix Transcription Factor SmbHLH1 Represses Anthocyanin Biosynthesis in Eggplant
por: Zhaofei Duan, et al.
Publicado: (2021)

High-Resolution Genome-Wide Occupancy in <italic toggle="yes">Candida</italic> spp. Using ChEC-seq
por: Faiza Tebbji, et al.
Publicado: (2020)

Reconstruction of a Global Transcriptional Regulatory Network for Control of Lipid Metabolism in Yeast by Using Chromatin Immunoprecipitation with Lambda Exonuclease Digestion
por: David Bergenholm, et al.
Publicado: (2018)

Direct Nanopore Sequencing of mRNA Reveals Landscape of Transcript Isoforms in Apicomplexan Parasites
por: V. Vern Lee, et al.
Publicado: (2021)

Transcription Factor Repurposing Offers Insights into Evolution of Biosynthetic Gene Cluster Regulation
por: Wenjie Wang, et al.
Publicado: (2021)

Global Network Analysis of <named-content content-type="genus-species">Neisseria gonorrhoeae</named-content> Identifies Coordination between Pathways, Processes, and Regulators Expressed during Human Infection
por: Ryan McClure, et al.
Publicado: (2020)

Editorial: Gene Regulation as a Driver of Adaptation and Speciation
por: Deborah A. Triant, et al.
Publicado: (2021)

A comprehensive transcription factor and DNA-binding motif resource for the construction of gene regulatory networks in Botrytis cinerea and Trichoderma atroviride
por: Consuelo Olivares-Yañez, et al.
Publicado: (2021)

Newly Identified Nucleoid-Associated-Like Protein YlxR Regulates Metabolic Gene Expression in <named-content content-type="genus-species">Bacillus subtilis</named-content>
por: Mitsuo Ogura, et al.
Publicado: (2018)

Genome-Scale Mapping Reveals Complex Regulatory Activities of RpoN in <named-content content-type="genus-species">Yersinia pseudotuberculosis</named-content>
por: A. K. M. Firoj Mahmud, et al.
Publicado: (2020)

Reading between the Lines: Utilizing RNA-Seq Data for Global Analysis of sRNAs in <named-content content-type="genus-species">Staphylococcus aureus</named-content>
por: Hailee M. Sorensen, et al.
Publicado: (2020)

Transcriptomic, Proteomic, and Metabolic Profiles of Catalpa bungei Tension Wood Reveal New Insight Into Lignin Biosynthesis Involving Transcription Factor Regulation
por: Yao Xiao, et al.
Publicado: (2021)

Elucidation of Regulatory Modes for Five Two-Component Systems in <named-content content-type="genus-species">Escherichia coli</named-content> Reveals Novel Relationships
por: Kumari Sonal Choudhary, et al.
Publicado: (2020)

Network Rewiring: Physiological Consequences of Reciprocally Exchanging the Physical Locations and Growth-Phase-Dependent Expression Patterns of the <italic toggle="yes">Salmonella fis</italic> and <italic toggle="yes">dps</italic> Genes
por: Marina M. Bogue, et al.
Publicado: (2020)

Elucidation of the Pathogenicity-Associated Regulatory Network in <named-content content-type="genus-species">Xanthomonas oryzae</named-content> pv. oryzae
por: Dehong Zheng, et al.
Publicado: (2021)

Deep analysis of neuroblastoma core regulatory circuitries using online databases and integrated bioinformatics shows their pan-cancer roles as prognostic predictors
por: Leila Jahangiri, et al.
Publicado: (2021)

Mechanisms Underlying Hox-Mediated Transcriptional Outcomes
por: Brittany Cain, et al.
Publicado: (2021)

Doxycycline Changes the Transcriptome Profile of mIMCD3 Renal Epithelial Cells
por: Hyun Jun Jung, et al.
Publicado: (2021)

Intracellular and Intercellular Gene Regulatory Network Inference From Time-Course Individual RNA-Seq
por: Makoto Kashima, et al.
Publicado: (2021)

Enhancer analysis of the Drosophila zinc finger transcription factor Earmuff by gene targeting
por: Kirsten Hildebrandt, et al.
Publicado: (2021)

Mycobacterial SigA and SigB Cotranscribe Essential Housekeeping Genes during Exponential Growth
por: Kelley Hurst-Hess, et al.
Publicado: (2019)

PPARγ, FAS, HSL mRNA and protein expression during Tan sheep fat-tail development
por: Xu,Xiaochun, et al.
Publicado: (2015)

E.coli Nissle increases transcription of flagella assembly and formate hydrogenlyase genes in response to colitis
por: Louis C Dacquay, et al.
Publicado: (2021)

Ssl2/TFIIH function in transcription start site scanning by RNA polymerase II in Saccharomyces cerevisiae
por: Tingting Zhao, et al.
Publicado: (2021)

Rgg-LIKE TRANSCRIPTIONAL REGULATORS IN STREPTOCOCCUS spp.
por: A. V. Dmitriev, et al.
Publicado: (2016)

Combined Stress Conditions in Melon Induce Non-additive Effects in the Core miRNA Regulatory Network
por: Pascual Villalba-Bermell, et al.
Publicado: (2021)

Systematic Identification of Endogenous Retroviral Protein-Coding Genes Expressed in Canine Oral Malignant Melanoma
por: Koichi Kitao, et al.
Publicado: (2021)

Functional analysis of enhancer elements regulating the expression of the Drosophila homeodomain transcription factor DRx by gene targeting
por: Christine Klöppel, et al.
Publicado: (2021)

Systematic Discovery of Archaeal Transcription Factor Functions in Regulatory Networks through Quantitative Phenotyping Analysis
por: Cynthia L. Darnell, et al.
Publicado: (2017)

Cell-to-Cell Variation in Defective Virus Expression and Effects on Host Responses during Influenza Virus Infection
por: Chang Wang, et al.
Publicado: (2020)

Genome-Wide Analysis of Transcriptional Changes and Genes That Contribute to Fitness during Degradation of the Anthropogenic Pollutant Pentachlorophenol by <named-content content-type="genus-species">Sphingobium chlorophenolicum</named-content>
por: Jake J. Flood, et al.
Publicado: (2018)

Nucleotide Resolution Comparison of Transcription of Human Cytomegalovirus and Host Genomes Reveals Universal Use of RNA Polymerase II Elongation Control Driven by Dissimilar Core Promoter Elements
por: Mrutyunjaya Parida, et al.
Publicado: (2019)

Yap5 Competes With Hap4 for the Regulation of Iron Homeostasis Genes in the Human Pathogen Candida glabrata
por: Thierry Delaveau, et al.
Publicado: (2021)

Regulation of MYB Transcription Factors of Anthocyanin Synthesis in Lily Flowers
por: Xiaojuan Yin, et al.
Publicado: (2021)

Integrated Study of Transcriptome-wide m6A Methylome Reveals Novel Insights Into the Character and Function of m6A Methylation During Yak Adipocyte Differentiation
por: Yongfeng Zhang, et al.
Publicado: (2021)

Cracking in sweet cherries: A comprehensive review from a physiological, molecular, and genomic perspective
por: Balbontín,Cristián, et al.
Publicado: (2013)

In Silico and Transcription Analysis of Trehalose-6-phosphate Phosphatase Gene Family of Wheat: Trehalose Synthesis Genes Contribute to Salinity, Drought Stress and Leaf Senescence
por: Md Ashraful Islam, et al.
Publicado: (2021)