An Open-Source Toolkit To Expand Bioinformatics Training in Infectious Diseases

ABSTRACT As access to high-throughput sequencing technology has increased, the bottleneck in biomedical research has shifted from data generation to data analysis. Here, we describe a modular and extensible framework for didactic instruction in bioinformatics using publicly available RNA sequencing...

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Autores principales:	Alexander S. F. Berry, Camila Farias Amorim, Corbett L. Berry, Camille M. Syrett, Elise D. English, Daniel P. Beiting
Formato:	article
Lenguaje:	EN
Publicado:	American Society for Microbiology 2021
Materias:	education bioinformatics genomics infectious disease transcription Microbiology QR1-502
Acceso en línea:	https://doaj.org/article/6a4bec55a2e84626a3c94f626b19d7e7
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spelling	oai:doaj.org-article:6a4bec55a2e84626a3c94f626b19d7e72021-11-10T18:37:52ZAn Open-Source Toolkit To Expand Bioinformatics Training in Infectious Diseases10.1128/mBio.01214-212150-7511https://doaj.org/article/6a4bec55a2e84626a3c94f626b19d7e72021-08-01T00:00:00Zhttps://journals.asm.org/doi/10.1128/mBio.01214-21https://doaj.org/toc/2150-7511ABSTRACT As access to high-throughput sequencing technology has increased, the bottleneck in biomedical research has shifted from data generation to data analysis. Here, we describe a modular and extensible framework for didactic instruction in bioinformatics using publicly available RNA sequencing data sets from infectious disease studies, with a focus on host-parasite interactions. We highlight lessons learned from adapting this course for virtual learners during the coronavirus disease 2019 (COVID-19) pandemic.Alexander S. F. BerryCamila Farias AmorimCorbett L. BerryCamille M. SyrettElise D. EnglishDaniel P. BeitingAmerican Society for Microbiologyarticleeducationbioinformaticsgenomicsinfectious diseasetranscriptionMicrobiologyQR1-502ENmBio, Vol 12, Iss 4 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	education bioinformatics genomics infectious disease transcription Microbiology QR1-502
spellingShingle	education bioinformatics genomics infectious disease transcription Microbiology QR1-502 Alexander S. F. Berry Camila Farias Amorim Corbett L. Berry Camille M. Syrett Elise D. English Daniel P. Beiting An Open-Source Toolkit To Expand Bioinformatics Training in Infectious Diseases
description	ABSTRACT As access to high-throughput sequencing technology has increased, the bottleneck in biomedical research has shifted from data generation to data analysis. Here, we describe a modular and extensible framework for didactic instruction in bioinformatics using publicly available RNA sequencing data sets from infectious disease studies, with a focus on host-parasite interactions. We highlight lessons learned from adapting this course for virtual learners during the coronavirus disease 2019 (COVID-19) pandemic.
format	article
author	Alexander S. F. Berry Camila Farias Amorim Corbett L. Berry Camille M. Syrett Elise D. English Daniel P. Beiting
author_facet	Alexander S. F. Berry Camila Farias Amorim Corbett L. Berry Camille M. Syrett Elise D. English Daniel P. Beiting
author_sort	Alexander S. F. Berry
title	An Open-Source Toolkit To Expand Bioinformatics Training in Infectious Diseases
title_short	An Open-Source Toolkit To Expand Bioinformatics Training in Infectious Diseases
title_full	An Open-Source Toolkit To Expand Bioinformatics Training in Infectious Diseases
title_fullStr	An Open-Source Toolkit To Expand Bioinformatics Training in Infectious Diseases
title_full_unstemmed	An Open-Source Toolkit To Expand Bioinformatics Training in Infectious Diseases
title_sort	open-source toolkit to expand bioinformatics training in infectious diseases
publisher	American Society for Microbiology
publishDate	2021
url	https://doaj.org/article/6a4bec55a2e84626a3c94f626b19d7e7
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An Open-Source Toolkit To Expand Bioinformatics Training in Infectious Diseases

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