Scaffolding and completing genome assemblies in real-time with nanopore sequencing

Assembling genomes using currently available computational methods can be time consuming. Here, Coin and colleagues describe a bioinformatics tool named npScarf that can scaffold and complete an existing short read assembly in real-time using nanopore sequencing.

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Autores principales:	Minh Duc Cao, Son Hoang Nguyen, Devika Ganesamoorthy, Alysha G. Elliott, Matthew A. Cooper, Lachlan J. M. Coin
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2017
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/6ae502fb25914ebfb2682688ad60502a
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spelling	oai:doaj.org-article:6ae502fb25914ebfb2682688ad60502a2021-12-02T17:01:23ZScaffolding and completing genome assemblies in real-time with nanopore sequencing10.1038/ncomms145152041-1723https://doaj.org/article/6ae502fb25914ebfb2682688ad60502a2017-02-01T00:00:00Zhttps://doi.org/10.1038/ncomms14515https://doaj.org/toc/2041-1723Assembling genomes using currently available computational methods can be time consuming. Here, Coin and colleagues describe a bioinformatics tool named npScarf that can scaffold and complete an existing short read assembly in real-time using nanopore sequencing.Minh Duc CaoSon Hoang NguyenDevika GanesamoorthyAlysha G. ElliottMatthew A. CooperLachlan J. M. CoinNature PortfolioarticleScienceQENNature Communications, Vol 8, Iss 1, Pp 1-10 (2017)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Minh Duc Cao Son Hoang Nguyen Devika Ganesamoorthy Alysha G. Elliott Matthew A. Cooper Lachlan J. M. Coin Scaffolding and completing genome assemblies in real-time with nanopore sequencing
description	Assembling genomes using currently available computational methods can be time consuming. Here, Coin and colleagues describe a bioinformatics tool named npScarf that can scaffold and complete an existing short read assembly in real-time using nanopore sequencing.
format	article
author	Minh Duc Cao Son Hoang Nguyen Devika Ganesamoorthy Alysha G. Elliott Matthew A. Cooper Lachlan J. M. Coin
author_facet	Minh Duc Cao Son Hoang Nguyen Devika Ganesamoorthy Alysha G. Elliott Matthew A. Cooper Lachlan J. M. Coin
author_sort	Minh Duc Cao
title	Scaffolding and completing genome assemblies in real-time with nanopore sequencing
title_short	Scaffolding and completing genome assemblies in real-time with nanopore sequencing
title_full	Scaffolding and completing genome assemblies in real-time with nanopore sequencing
title_fullStr	Scaffolding and completing genome assemblies in real-time with nanopore sequencing
title_full_unstemmed	Scaffolding and completing genome assemblies in real-time with nanopore sequencing
title_sort	scaffolding and completing genome assemblies in real-time with nanopore sequencing
publisher	Nature Portfolio
publishDate	2017
url	https://doaj.org/article/6ae502fb25914ebfb2682688ad60502a
work_keys_str_mv	AT minhduccao scaffoldingandcompletinggenomeassembliesinrealtimewithnanoporesequencing AT sonhoangnguyen scaffoldingandcompletinggenomeassembliesinrealtimewithnanoporesequencing AT devikaganesamoorthy scaffoldingandcompletinggenomeassembliesinrealtimewithnanoporesequencing AT alyshagelliott scaffoldingandcompletinggenomeassembliesinrealtimewithnanoporesequencing AT matthewacooper scaffoldingandcompletinggenomeassembliesinrealtimewithnanoporesequencing AT lachlanjmcoin scaffoldingandcompletinggenomeassembliesinrealtimewithnanoporesequencing
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Scaffolding and completing genome assemblies in real-time with nanopore sequencing

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