Scaffolding and completing genome assemblies in real-time with nanopore sequencing
Assembling genomes using currently available computational methods can be time consuming. Here, Coin and colleagues describe a bioinformatics tool named npScarf that can scaffold and complete an existing short read assembly in real-time using nanopore sequencing.
Guardado en:
Autores principales: | Minh Duc Cao, Son Hoang Nguyen, Devika Ganesamoorthy, Alysha G. Elliott, Matthew A. Cooper, Lachlan J. M. Coin |
---|---|
Formato: | article |
Lenguaje: | EN |
Publicado: |
Nature Portfolio
2017
|
Materias: | |
Acceso en línea: | https://doaj.org/article/6ae502fb25914ebfb2682688ad60502a |
Etiquetas: |
Agregar Etiqueta
Sin Etiquetas, Sea el primero en etiquetar este registro!
|
Ejemplares similares
-
Assembly methods for nanopore-based metagenomic sequencing: a comparative study
por: Adriel Latorre-Pérez, et al.
Publicado: (2020) -
Optimizing experimental design for genome sequencing and assembly with Oxford Nanopore Technologies
por: John M. Sutton, et al.
Publicado: (2021) -
A chromosome-scale assembly of the sorghum genome using nanopore sequencing and optical mapping
por: Stéphane Deschamps, et al.
Publicado: (2018) -
Sequencing and de novo assembly of a near complete indica rice genome
por: Huilong Du, et al.
Publicado: (2017) -
A targeted approach with nanopore sequencing for the universal detection and identification of flaviviruses
por: Patrick Reteng, et al.
Publicado: (2021)