Determination of k-mer density in a DNA sequence and subsequent cluster formation algorithm based on the application of electronic filter

Determination of k-mer density in a DNA sequence and subsequent cluster formation algorithm based on the application of electronic filter

Abstract We describe a novel algorithm for information recovery from DNA sequences by using a digital filter. This work proposes a three-part algorithm to decide the k-mer or q-gram word density. Employing a finite impulse response digital filter, one can calculate the sequence's k-mer or q-gra...

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Autores principales: Bimal Kumar Sarkar, Ashish Ranjan Sharma, Manojit Bhattacharya, Garima Sharma, Sang-Soo Lee, Chiranjib Chakraborty
Formato: article
Lenguaje:EN
Publicado: Nature Portfolio 2021
Materias:
Medicine
R
Science
Q
Acceso en línea:https://doaj.org/article/6b477e1a397b4fc8a0a804618f67199d
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